RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 RAPGEFL1Q9UHV5 662 aa8.4□□□□□ -1.06
CCDC47-207ENST00000612558 RPS6KA6Q9UK32 745 aa8.4□□□□□ -1.06
CCDC47-207ENST00000612558 ACSL6Q9UKU0 697 aa8.4□□□□□ -1.06
CCDC47-207ENST00000612558 CNOT11Q9UKZ1 510 aaKnown RBP8.4□□□□□ -1.06
CCDC47-207ENST00000612558 PLCL2Q9UPR0 1127 aa8.4□□□□□ -1.06
CCDC47-207ENST00000612558 SAMD4AQ9UPU9 718 aaKnown RBP8.4□□□□□ -1.06
CCDC47-207ENST00000612558 MRPS2Q9Y399 296 aaKnown RBP8.4□□□□□ -1.06
CCDC47-207ENST00000612558 NAALAD2Q9Y3Q0 740 aa8.4□□□□□ -1.06
CCDC47-207ENST00000612558 DTNAQ9Y4J8 743 aa8.4□□□□□ -1.06
CCDC47-207ENST00000612558 V9GYQ6 96 aa8.4□□□□□ -1.06
CCDC47-207ENST00000612558 IGHV5-51A0A0C4DH38 117 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 TPST1O60507 370 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 PRKD3O94806 890 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 C9P02748 559 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ETFAP13804 333 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ACADSP16219 412 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 PCGF2P35227 344 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 FEN1P39748 380 aaKnown RBP8.39□□□□□ -1.07
CCDC47-207ENST00000612558 MAGEA8P43361 318 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CDK9P50750 372 aaKnown RBP8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CASP9P55211 416 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SKP1P63208 163 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 FAM53BQ14153 422 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 NR0B2Q15466 257 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ZNF630Q2M218 657 aaPredicted RBP8.39□□□□□ -1.07
CCDC47-207ENST00000612558 AMZ1Q400G9 498 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CMPK2Q5EBM0 449 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 TCTE1Q5JU00 501 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 GARNL3Q5VVW2 1013 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 BHLHB9Q6PI77 547 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 WDR74Q6RFH5 385 aaPredicted RBP8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ENPP6Q6UWR7 440 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 TMEM64Q6YI46 380 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 PRSS41Q7RTY9 318 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 C6orf120Q7Z4R8 191 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 PDSS2Q86YH6 399 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 GATAD2AQ86YP4 633 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SLC30A8Q8IWU4 369 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 KBTBD2Q8IY47 623 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ARHGEF39Q8N4T4 335 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ANKFN1Q8N957 763 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 Q8N9G6 341 aaPredicted RBP8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ZBTB44Q8NCP5 570 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 OR4K14Q8NGD5 310 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SUN3Q8TAQ9 357 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SFXN5Q8TD22 340 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 N4BP2L2Q92802 583 aaPredicted RBP8.39□□□□□ -1.07
CCDC47-207ENST00000612558 EME1Q96AY2 570 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 TTC28Q96AY4 2481 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SLC47A1Q96FL8 570 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CENPNQ96H22 339 aaPredicted RBP8.39□□□□□ -1.07
CCDC47-207ENST00000612558 NAF1Q96HR8 494 aaKnown RBP8.39□□□□□ -1.07
CCDC47-207ENST00000612558 PYURFQ96I23 114 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 C10orf90Q96M02 699 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ZNF681Q96N22 645 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 VCXQ9H320 206 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 GAREM1Q9H706 876 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CAPN10Q9HC96 672 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SEMA5BQ9P283 1151 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 KLHL3Q9UH77 587 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 MUC3AQ02505 3323 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SEC16AO15027 2179 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 FITM1A5D6W6 292 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ZNF860A6NHJ4 632 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SGK494L7N484 410 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CYR61O00622 381 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 B4GALT2O60909 372 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 DNAJB6O75190 326 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CER1O95813 267 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 LDLRP01130 860 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CTSBP07858 339 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SP9P0CG40 484 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 C8orf89P0DMQ9 161 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 MYF5P13349 255 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ATP6V1C1P21283 382 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CD1CP29017 333 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ARL4DP49703 201 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CCT8P50990 548 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 XKP51811 444 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 DSTNP60981 165 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 OLR1P78380 273 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 HSD11B2P80365 405 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CDK6Q00534 326 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CFHR1Q03591 330 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SCARB2Q14108 478 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ATP6AP1Q15904 470 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 ZNF750Q32MQ0 723 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 LRRC23Q53EV4 343 aaPredicted RBP8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SFT2D3Q587I9 215 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 INTS11Q5TA45 600 aaKnown RBP8.39□□□□□ -1.07
CCDC47-207ENST00000612558 SLC23A3Q6PIS1 610 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CEACAM20Q6UY09 585 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 USP53Q70EK8 1073 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 FKBP9P1Q75LS8 142 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CCDC80Q76M96 950 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 BMP8AQ7Z5Y6 402 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 CA13Q8N1Q1 262 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 LRRC25Q8N386 305 aaPredicted RBP8.39□□□□□ -1.07
CCDC47-207ENST00000612558 FAM86B1Q8N7N1 296 aa8.39□□□□□ -1.07
CCDC47-207ENST00000612558 FAM181AQ8N9Y4 354 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms