RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 RAB34Q9BZG1 259 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 TM6SF2Q9BZW4 377 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 C1orf21Q9H246 121 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 ABCC13Q9NSE7 274 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 SIRT3Q9NTG7 399 aaPredicted RBP4.05□□□□□ -1.76
LINC00540-201ENST00000611481 OGFRQ9NZT2 677 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 EXOC7Q9UPT5 735 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 MTMR6Q9Y217 621 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 RCE1Q9Y256 329 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 PADI2Q9Y2J8 665 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 ADAM18Q9Y3Q7 739 aa4.05□□□□□ -1.76
LINC00540-201ENST00000611481 PCLOQ9Y6V0 5065 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 TENM1Q9UKZ4 2725 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 HYDINQ4G0P3 5121 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 LRRD1A4D1F6 860 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 AGAP5A6NIR3 686 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 C9J4A7 227 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 NPIPA5E9PKD4 350 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 TULP2O00295 520 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 CTIFO43310 598 aaKnown RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 CD5LO43866 347 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 TMPRSS11DO60235 418 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 KLF7O75840 302 aaPredicted RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 RECQL5O94762 991 aaPredicted RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 APOEP02649 317 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 NGFRP08138 427 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF8P17098 575 aaPredicted RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 AMD1P17707 334 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 RBL1P28749 1068 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 TACR3P29371 465 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 TTKP33981 857 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 TNFSF10P50591 281 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 FOXL2P58012 376 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ACY1Q03154 408 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 NIPAL4Q0D2K0 466 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 LRRC74AQ0VAA2 488 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ADIGQ0VDE8 80 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 MFAP5Q13361 173 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ALCAMQ13740 583 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ACOX1Q15067 660 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 GSTA3Q16772 222 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 DPCR1Q3MIW9 517 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 TMEM52BQ4KMG9 183 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 RABGAP1LQ5R372 815 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 LIPNQ5VXI9 398 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 CST9LP1Q5W188 147 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 IRGCQ6NXR0 463 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 BLOC1S2Q6QNY1 142 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 CERS6Q6ZMG9 384 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF793Q6ZN11 406 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF720Q7Z2F6 126 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 PRSS42Q7Z5A4 293 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 PCDH20Q8N6Y1 951 aaKnown RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 C3orf56Q8N813 242 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF540Q8NDQ6 660 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF606Q8WXB4 792 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 RND1Q92730 232 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 CTHRC1Q96CG8 243 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 RNFT2Q96EX2 444 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 PDLIM5Q96HC4 596 aaKnown RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF479Q96JC4 524 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF514Q96K75 400 aaPredicted RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 LRFN5Q96NI6 719 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 RPRD1AQ96P16 312 aaPredicted RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ACCSQ96QU6 501 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 EIF3CQ99613 913 aaKnown RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 NPAS1Q99742 590 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 STRA6Q9BX79 667 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 BEX2Q9BXY8 128 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 CUEDC2Q9H467 287 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 ST6GALNAC4Q9H4F1 302 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 LRRC4Q9HBW1 653 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 SAMSN1Q9NSI8 373 aaKnown RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 MGAT4CQ9UBM8 478 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 CNOT8Q9UFF9 292 aaKnown RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 OSGIN1Q9UJX0 560 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 FBXL4Q9UKA2 621 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 NPIPA1Q9UND3 350 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 PTRH2Q9Y3E5 179 aaKnown RBP4.04□□□□□ -1.76
LINC00540-201ENST00000611481 POMT1Q9Y6A1 747 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 NUP210LQ5VU65 1888 aa4.04□□□□□ -1.76
LINC00540-201ENST00000611481 SPTBP11277 2137 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 RYR1P21817 5038 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 LOC100509620A0A075B734 347 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 IGHV5-51A0A0C4DH38 117 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 A0A0D9SEW6 157 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 TEX13CA0A0J9YWL9 993 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 TRBC2A0A5B9 178 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 A4D1N5 150 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 OR2A25A4D2G3 310 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 AGPSO00116 658 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 PGRMC2O15173 223 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 EIF3DO15371 548 aaKnown RBP eCLIP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 PRPF4O43172 522 aaKnown RBP eCLIP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 SOCS5O75159 536 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 ADCY5O95622 1261 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 SYF2O95926 243 aaKnown RBP4.03□□□□□ -1.76
LINC00540-201ENST00000611481 RHOCP08134 193 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 CD63P08962 238 aa4.03□□□□□ -1.76
LINC00540-201ENST00000611481 HOXC4P09017 264 aaPredicted RBP4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms