RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 DMWDQ09019 674 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 COLEC12Q5KU26 742 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 SBSNQ6UWP8 590 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 C6orf120Q7Z4R8 191 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 FAM156AQ8NDB6 213 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 OR56A3Q8NH54 315 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 TMEM234Q8WY98 164 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 GPATCH1Q9BRR8 931 aaKnown RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 LRRN3Q9H3W5 708 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 TAS2R1Q9NYW7 299 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 NXT1Q9UKK6 140 aaKnown RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 MYL12BO14950 172 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 CPNE3O75131 537 aaKnown RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 KRT36O76013 467 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 GADD45GO95257 159 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 P04436 131 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 GSK3BP49841 420 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 ELF3P78545 371 aaPredicted RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 BNIP3Q12983 259 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 C6orf183Q5T699 404 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 GARNL3Q5VVW2 1013 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 LAIR1Q6GTX8 287 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 ABRAXAS1Q6UWZ7 409 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 SHISA6Q6ZSJ9 500 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 EPHX4Q8IUS5 362 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 CRIPAKQ8N1N5 446 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 SVOPQ8N4V2 548 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 TP53I13Q8NBR0 393 aaPredicted RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 GEMIN6Q8WXD5 167 aaKnown RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 ASB15Q8WXK1 588 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 RSC1A1Q92681 617 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 SH3YL1Q96HL8 342 aaPredicted RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 IL1RAPQ9NPH3 570 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 KCND3Q9UK17 655 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 OPN1SWP03999 348 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 RPS9P46781 194 aaKnown RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 TXNL4AP83876 142 aaKnown RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 MANEAQ5SRI9 462 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 FAM69BQ5VUD6 431 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 GPR153Q6NV75 609 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 SLCO4C1Q6ZQN7 724 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 BBS10Q8TAM1 723 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 DOK4Q8TEW6 326 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 UBTD2Q8WUN7 234 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 TM9SF4Q92544 642 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 TUBA1CQ9BQE3 449 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 EPS8L2Q9H6S3 715 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 NEK6Q9HC98 313 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 FARSBQ9NSD9 589 aaKnown RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 IFT52Q9Y366 437 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 CBY1Q9Y3M2 126 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 C4orf47A7E2U8 309 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 AKAP8O43823 692 aaKnown RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 CCNB2O95067 398 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 AHCYP23526 432 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 ETV4P43268 484 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 ZNF550Q7Z398 422 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 FAM220AQ7Z4H9 259 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 PQLC1Q8N2U9 271 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 OR52E4Q8NGH9 312 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 GIPC3Q8TF64 312 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 LINC00615Q96LM1 132 aaPredicted RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 ZBTB20Q9HC78 741 aaPredicted RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 USE1Q9NZ43 259 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 ATXN7L1Q9ULK2 861 aaPredicted RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 NSG1A0A0A6YYJ2 146 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 A8MVJ9 347 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 C17orf105B2RV13 164 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 HCRTR2O43614 444 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 SCO2O43819 266 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 SNNO75324 88 aaPredicted RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 AHSA1O95433 338 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 CSF2P04141 144 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 DHRS4L1P0CG22 281 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 OR12D1P0DN82 309 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 ATP6V1B1P15313 513 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 LTBRP36941 435 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 RBBP4Q09028 425 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 SLC5A12Q1EHB4 618 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 FAM91A1Q658Y4 838 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 CWF19L1Q69YN2 538 aaKnown RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 RAB11FIP2Q7L804 512 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 ZNF551Q7Z340 670 aaPredicted RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 SLC25A36Q96CQ1 311 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 KCNS3Q9BQ31 491 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 LRRC61Q9BV99 259 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 PAIP1Q9H074 479 aaKnown RBP9.34□□□□□ -0.91
LIG3-216ENST00000593099 HPF1Q9NWY4 346 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 PPP4R1LQ9P1A2 415 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 SLC23A2Q9UGH3 650 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 KLF15Q9UIH9 416 aa9.34□□□□□ -0.91
LIG3-216ENST00000593099 AQP12BA6NM10 295 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 SIGLEC6O43699 453 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 SULT1B1O43704 296 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 TPST2O60704 377 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 FCARP24071 287 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 CASP6P55212 293 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 STARD6P59095 220 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 REEP5Q00765 189 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 TRAP1Q12931 704 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms