RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 LIME1Q9H400 295 aa3.83□□□□□ -1.8
SMCHD1-205ENST00000581383 MOB1AQ9H8S9 216 aa3.83□□□□□ -1.8
SMCHD1-205ENST00000581383 THYN1Q9P016 225 aa3.83□□□□□ -1.8
SMCHD1-205ENST00000581383 KCNN3Q9UGI6 736 aa3.83□□□□□ -1.8
SMCHD1-205ENST00000581383 ODF2LQ9ULJ1 636 aa3.83□□□□□ -1.8
SMCHD1-205ENST00000581383 NUDCQ9Y266 331 aa3.83□□□□□ -1.8
SMCHD1-205ENST00000581383 MOB4Q9Y3A3 225 aa3.83□□□□□ -1.8
SMCHD1-205ENST00000581383 AUP1Q9Y679 476 aa3.83□□□□□ -1.8
SMCHD1-205ENST00000581383 FER1L5A0AVI2 2057 aa3.83□□□□□ -1.8
SMCHD1-205ENST00000581383 NPC1L1Q9UHC9 1359 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 SALL1Q9NSC2 1324 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 KRT87PA6NCN2 255 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 K7EQG2 157 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 LRP3O75074 770 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 SEC22BO75396 215 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 OR6B1O95007 311 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 SYNGR4O95473 234 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 CCDC192P0DO97 292 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 SFNP31947 248 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 SLC1A6P48664 564 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 ATP4BP51164 291 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 STARD6P59095 220 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 RPS4XP62701 263 aaKnown RBP3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 ITPK1Q13572 414 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 ENPP2Q13822 863 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 MUC21Q5SSG8 566 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 CNSTQ6PJW8 725 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 PAQR6Q6TCH4 344 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 MFSD7Q6UXD7 560 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 TAF8Q7Z7C8 310 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 RNF130Q86XS8 419 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 CHDHQ8NE62 594 aaPredicted RBP3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 OR1B1Q8NGR6 318 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 UBE2Q2Q8WVN8 375 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 PNPLA2Q96AD5 504 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 C16orf58Q96GQ5 468 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 NSMCE2Q96MF7 247 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 COQ7Q99807 217 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 PYGO2Q9BRQ0 406 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 DCTN5Q9BTE1 182 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 TUBB1Q9H4B7 451 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 NT5DC2Q9H857 520 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 CCPG1Q9ULG6 757 aa3.82□□□□□ -1.8
SMCHD1-205ENST00000581383 RAD54L2Q9Y4B4 1467 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 IGHV3OR16-10A0A075B7F0 116 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 A0A0U1RRA0 63 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 CFAP73A6NFT4 308 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 ARHGAP42A6NI28 874 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 KRTAP16-1A8MUX0 517 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 PGK2P07205 417 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 NOVP48745 357 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 CCL11P51671 97 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 RIDAP52758 137 aaKnown RBP3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 SSTP61278 116 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 MS4A2Q01362 244 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 PAX8Q06710 450 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 FASTKQ14296 549 aaKnown RBP3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 SIX1Q15475 284 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 CLPPQ16740 277 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 HERC4Q5GLZ8 1057 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 DDI2Q5TDH0 399 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 STEAP1BQ6NZ63 245 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 ZNF343Q6P1L6 599 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 METTL7BQ6UX53 244 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 RPAINQ86UA6 219 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 CCDC71Q8IV32 467 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 ZNF781Q8N8C0 355 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 ZNRF1Q8ND25 227 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 RBM4BQ9BQ04 359 aaKnown RBP3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 CCDC28BQ9BUN5 200 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 SIRPDQ9H106 197 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 PANK3Q9H999 370 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 HPS4Q9NQG7 708 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 HOMER3Q9NSC5 361 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 SPASTQ9UBP0 616 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 EIF3KQ9UBQ5 218 aaKnown RBP3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 CTSZQ9UBR2 303 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 ZNF346Q9UL40 294 aaKnown RBP3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 FBXO7Q9Y3I1 522 aa3.81□□□□□ -1.8
SMCHD1-205ENST00000581383 IGKV6D-41A0A0C4DH26 115 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 TMEM89A2RUT3 159 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 SH2D1BO14796 132 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 MT-ATP6P00846 226 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 FCER2P06734 321 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 PROS1P07225 676 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 APRTP07741 180 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 ETS1P14921 441 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 GNSP15586 552 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 ACP1P24666 158 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 AKT2P31751 481 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 HSPA1LP34931 641 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 ETV5P41161 510 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 RABIFP47224 123 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 ZNF131P52739 623 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 IL1RL1Q01638 556 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 RAPSNQ13702 412 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 KLF5Q13887 457 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 BTG3Q14201 252 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 GAMTQ14353 236 aa3.8□□□□□ -1.8
SMCHD1-205ENST00000581383 EMC2Q15006 297 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms