RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ITSN1Q15811 1721 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 NCAPD2Q15021 1401 aa4.2□□□□□ -1.74
NUP88-213ENST00000576862 MED1Q15648 1581 aaPredicted RBP4.19□□□□□ -1.74
NUP88-213ENST00000576862 MAP3K5Q99683 1374 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 RGPD1P0DJD0 1748 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 KRTAP9-6A8MVA2 160 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 ARHGEF33A8MVX0 844 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 ZNF732B4DXR9 585 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 H0YC42 278 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 TNFSF12O43508 249 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 ACSL4O60488 711 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 TSC22D2O75157 780 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 SNX4O95219 450 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 KRT3P12035 628 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 FOLR2P14207 255 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 HLA-DPA1P20036 260 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 CD9P21926 228 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 PKLRP30613 574 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 HSPA1LP34931 641 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 ASMTP46597 345 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 ATP4BP51164 291 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 ABCE1P61221 599 aaKnown RBP4.19□□□□□ -1.74
NUP88-213ENST00000576862 FOLH1Q04609 750 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 SHROOM1Q2M3G4 852 aaPredicted RBP4.19□□□□□ -1.74
NUP88-213ENST00000576862 TWISTNBQ3B726 338 aaPredicted RBP4.19□□□□□ -1.74
NUP88-213ENST00000576862 RAB12Q6IQ22 244 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 TMEM110Q86TL2 294 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 CCDC170Q8IYT3 715 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 C16orf45Q96MC5 204 aaPredicted RBP4.19□□□□□ -1.74
NUP88-213ENST00000576862 PRMT1Q99873 361 aaKnown RBP4.19□□□□□ -1.74
NUP88-213ENST00000576862 ATF6BQ99941 703 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 CCDC28BQ9BUN5 200 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 CCDC94Q9BW85 323 aaPredicted RBP4.19□□□□□ -1.74
NUP88-213ENST00000576862 RWDD1Q9H446 243 aaPredicted RBP4.19□□□□□ -1.74
NUP88-213ENST00000576862 DPEP2Q9H4A9 486 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 VPS37BQ9H9H4 285 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 CGNQ9P2M7 1197 aaKnown RBP4.19□□□□□ -1.74
NUP88-213ENST00000576862 STRCP1A6NGW2 1772 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 USP54Q70EL1 1684 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 KIF16BQ96L93 1317 aa4.19□□□□□ -1.74
NUP88-213ENST00000576862 MARF1Q9Y4F3 1742 aaKnown RBP4.18□□□□□ -1.74
NUP88-213ENST00000576862 TP53BP1Q12888 1972 aaPredicted RBP4.18□□□□□ -1.74
NUP88-213ENST00000576862 CPDO75976 1380 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 KIAA0232Q92628 1395 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 IQCMA0A1B0GVH7 501 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 CCDC169A6NNP5 214 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 A8MU76 341 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 SHISA9B4DS77 424 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 PSMA7O14818 248 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 ST8SIA3O43173 380 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 TXNL1O43396 289 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 GZMAP12544 262 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 FERP16591 822 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 IL10P22301 178 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 CTNNA2P26232 953 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 MAPK3P27361 379 aaPredicted RBP4.18□□□□□ -1.74
NUP88-213ENST00000576862 SRD5A2P31213 254 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 TKTL1P51854 596 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 NDUFV3P56181 108 aaKnown RBP4.18□□□□□ -1.74
NUP88-213ENST00000576862 FCHO2Q0JRZ9 810 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 RIGQ13278 110 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 MLF2Q15773 248 aaPredicted RBP4.18□□□□□ -1.74
NUP88-213ENST00000576862 C2orf76Q3KRA6 126 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 CAVIN4Q5BKX8 364 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 ZRANB3Q5FWF4 1079 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 TCEAL6Q6IPX3 200 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 ZNF530Q6P9A1 599 aaPredicted RBP4.18□□□□□ -1.74
NUP88-213ENST00000576862 ZNF841Q6ZN19 808 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 TIPARPQ7Z3E1 657 aaKnown RBP4.18□□□□□ -1.74
NUP88-213ENST00000576862 CARM1Q86X55 608 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 DENND6BQ8NEG7 585 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 IPMKQ8NFU5 416 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 GDAP1Q8TB36 358 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 SPPL2AQ8TCT8 520 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 DEPDC1BQ8WUY9 529 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 MR1Q95460 341 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 FAM162AQ96A26 154 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 CRACR2AQ9BSW2 395 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 PUS3Q9BZE2 481 aaKnown RBP4.18□□□□□ -1.74
NUP88-213ENST00000576862 C3orf14Q9HBI5 128 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 TMOD3Q9NYL9 352 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 GTSE1Q9NYZ3 720 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 HPCAL4Q9UM19 191 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 ITM2BQ9Y287 266 aa4.18□□□□□ -1.74
NUP88-213ENST00000576862 TRPM3Q9HCF6 1732 aaPredicted RBP4.18□□□□□ -1.74
NUP88-213ENST00000576862 CEMIPQ8WUJ3 1361 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 KIF1AQ12756 1690 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 K7EQG2 157 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 SLC30A4O14863 429 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 SEC22BO75396 215 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 RLN1P04808 185 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 BCL3P20749 454 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 PIK3R1P27986 724 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 PTGER3P43115 390 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 KCNJ1P48048 391 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 LIMK2P53671 638 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 RPP38P78345 283 aaKnown RBP4.17□□□□□ -1.74
NUP88-213ENST00000576862 ZFP36L1Q07352 338 aaKnown RBP4.17□□□□□ -1.74
NUP88-213ENST00000576862 CCDC122Q5T0U0 273 aa4.17□□□□□ -1.74
NUP88-213ENST00000576862 FAM182AQ5T1J6 154 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms