RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 EHD3Q9NZN3 535 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 KCNK6Q9Y257 313 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 CHD9Q3L8U1 2897 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 SH3D21A4FU49 640 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 FAM227AF5H4B4 570 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 AIREO43918 545 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 ADORA3P0DMS8 318 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 OR12D1P0DN82 309 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 UGT2B10P36537 528 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 TGFBR1P36897 503 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 RPS21P63220 83 aaKnown RBP9.54□□□□□ -0.88
VPS53-220ENST00000576149 TBC1D25Q3MII6 688 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 FBXO43Q4G163 708 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 SLC46A3Q7Z3Q1 461 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 NLGN4XQ8N0W4 816 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 NACC2Q96BF6 587 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 TREX2Q9BQ50 279 aaPredicted RBP9.54□□□□□ -0.88
VPS53-220ENST00000576149 KLHL31Q9H511 634 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 SLC35C2Q9NQQ7 365 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 DZANK1Q9NVP4 752 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 ZSCAN32Q9NX65 697 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 SLC17A4Q9Y2C5 497 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 PLEKHM1Q9Y4G2 1056 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 ALPK3Q96L96 1907 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 TMEM247A6NEH6 219 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 MAN2B1O00754 1011 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 SLC28A2O43868 658 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 PRICKLE3O43900 615 aaPredicted RBP9.54□□□□□ -0.88
VPS53-220ENST00000576149 KCNJ13O60928 360 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 OXSR1O95747 527 aaPredicted RBP9.54□□□□□ -0.88
VPS53-220ENST00000576149 PTHP01270 115 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 OSMP13725 252 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 EN2P19622 333 aaPredicted RBP9.54□□□□□ -0.88
VPS53-220ENST00000576149 CD72P21854 359 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 GADD45AP24522 165 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 ELAVL4P26378 380 aaKnown RBP9.54□□□□□ -0.88
VPS53-220ENST00000576149 CNR2P34972 360 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 BCL6P41182 706 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 PSMD7P51665 324 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 TUBA1BP68363 451 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 HYAL2Q12891 473 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 SGCGQ13326 291 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 SEC23BQ15437 767 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 SYPL1Q16563 259 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 DCST1Q5T197 706 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 FAM92BQ6ZTR7 304 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 PTCHD4Q6ZW05 846 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 TUBA1AQ71U36 451 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 RBM45Q8IUH3 476 aaKnown RBP9.54□□□□□ -0.88
VPS53-220ENST00000576149 FAM20CQ8IXL6 584 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 B3GNT7Q8NFL0 401 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 OR4D11Q8NGI4 311 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 OR52E1Q8NGJ3 308 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 CRELD1Q96HD1 420 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 SLC35G5Q96KT7 338 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 WFDC6Q9BQY6 131 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 FAIM2Q9BWQ8 316 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 DCSTAMPQ9H295 470 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 OR51I1Q9H343 314 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 ANKHQ9HCJ1 492 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 MRPS30Q9NP92 439 aaKnown RBP9.54□□□□□ -0.88
VPS53-220ENST00000576149 P2RX2Q9UBL9 471 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 REV1Q9UBZ9 1251 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 SEC14L3Q9UDX4 400 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 MGAT4BQ9UQ53 548 aa9.54□□□□□ -0.88
VPS53-220ENST00000576149 GPC6Q9Y625 555 aaPredicted RBP9.54□□□□□ -0.88
VPS53-220ENST00000576149 OR52A4PA6NMU1 304 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 WASHC1A8K0Z3 465 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 FAAHO00519 579 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 SERPINB7O75635 380 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 H1F0P07305 194 aaKnown RBP9.53□□□□□ -0.88
VPS53-220ENST00000576149 HNRNPCP07910 306 aaKnown RBP eCLIP9.53□□□□□ -0.881e-6■■□□□ 11.4
VPS53-220ENST00000576149 BMP4P12644 408 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 GPC1P35052 558 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 ILKQ13418 452 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 KRT33BQ14525 404 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 SLC9A5Q14940 896 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 INAQ16352 499 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 ZNF776Q68DI1 518 aaPredicted RBP9.53□□□□□ -0.88
VPS53-220ENST00000576149 C16orf54Q6UWD8 224 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 WASH2PQ6VEQ5 465 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 LACC1Q8IV20 430 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 FAM46DQ8NEK8 389 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 OR5D16Q8NGK9 328 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 MS4A6EQ96DS6 147 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 KXD1Q9BQD3 176 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 CDCA4Q9BXL8 241 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 UCK2Q9BZX2 261 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 MVB12BQ9H7P6 319 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 ZBTB20Q9HC78 741 aaPredicted RBP9.53□□□□□ -0.88
VPS53-220ENST00000576149 SLC6A20Q9NP91 592 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 ENAMQ9NRM1 1142 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 CLN6Q9NWW5 311 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 CNOT2Q9NZN8 540 aaKnown RBP9.53□□□□□ -0.88
VPS53-220ENST00000576149 A0A1W2PQU0 124 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 FUOMA2VDF0 154 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 PRR23AA6NEV1 266 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 EFCAB10A6NFE3 127 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 C4orf51C9J302 202 aa9.53□□□□□ -0.88
VPS53-220ENST00000576149 PRKRAO75569 313 aaKnown RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms