RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 KRT12Q99456 494 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 OPN3Q9H1Y3 402 aaPredicted RBP16.37■□□□□ 0.21
CLK3-227ENST00000570296 BARX1Q9HBU1 254 aaPredicted RBP16.37■□□□□ 0.21
CLK3-227ENST00000570296 COMMD10Q9Y6G5 202 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 NOTCH1P46531 2555 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 A0A096LNT2 108 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 CAPN14A8MX76 684 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 DYRK3O43781 588 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 LDB3O75112 727 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 IFNB1P01574 187 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 THBDP07204 575 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 GMPRP36959 345 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 TIGD3Q6B0B8 471 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 ADAM5Q6NVV9 412 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 TAGAPQ8N103 731 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 SPPL2AQ8TCT8 520 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 CTHRC1Q96CG8 243 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 REPS1Q96D71 796 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 ZMYND19Q96E35 227 aaPredicted RBP16.36■□□□□ 0.21
CLK3-227ENST00000570296 TSNARE1Q96NA8 513 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 TNFRSF13CQ96RJ3 184 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 GAL3ST4Q96RP7 486 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 RHNO1Q9BSD3 238 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 EIF2B3Q9NR50 452 aaKnown RBP16.36■□□□□ 0.21
CLK3-227ENST00000570296 ABHD10Q9NUJ1 306 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 ARL15Q9NXU5 204 aa16.36■□□□□ 0.21
CLK3-227ENST00000570296 CTAGE9A4FU28 777 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 LRIT2A6NDA9 550 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 HCRTR2O43614 444 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 TBXA2RP21731 343 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 HPDP32754 393 aaPredicted RBP16.35■□□□□ 0.21
CLK3-227ENST00000570296 RGS4P49798 205 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 AP1S2P56377 157 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 FUT7Q11130 342 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 ZNF470Q6ECI4 717 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 NXPE4Q6UWF7 544 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 SLC29A4Q7RTT9 530 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 TTLQ8NG68 377 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 EEF1AKMT1Q8WVE0 214 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 FBXL20Q96IG2 436 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 WWTR1Q9GZV5 400 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 TEX10Q9NXF1 929 aaPredicted RBP16.35■□□□□ 0.21
CLK3-227ENST00000570296 PTBP2Q9UKA9 531 aaKnown RBP16.35■□□□□ 0.21
CLK3-227ENST00000570296 RNF112Q9ULX5 631 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 SOX13Q9UN79 622 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 DLGAP4Q9Y2H0 992 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 DYRK1BQ9Y463 629 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 MAD1L1Q9Y6D9 718 aa16.35■□□□□ 0.21
CLK3-227ENST00000570296 ALPK2Q86TB3 2170 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 PABPN1LA6NDY0 278 aaKnown RBP16.34■□□□□ 0.21
CLK3-227ENST00000570296 PLOD2O00469 737 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 CDH16O75309 829 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 TGM6O95932 706 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 SOD3P08294 240 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 CERS1P27544 350 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 CDKN1AP38936 164 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 MAGEA1P43355 309 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 STT3AP46977 705 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 FBXW4P57775 412 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 RPP38P78345 283 aaKnown RBP16.34■□□□□ 0.21
CLK3-227ENST00000570296 ANKRD34AQ69YU3 496 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 TRIM40Q6P9F5 258 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 TMPRSS11BQ86T26 416 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 MYO1HQ8N1T3 1032 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 OR2L5Q8NG80 312 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 SGMS2Q8NHU3 365 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 FBXL8Q96CD0 374 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 PLPPR2Q96GM1 343 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 HS6ST2Q96MM7 605 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 LYRM4Q9HD34 91 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 SYBUQ9NX95 663 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 WWOXQ9NZC7 414 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 LIPT1Q9Y234 373 aa16.34■□□□□ 0.21
CLK3-227ENST00000570296 UBFD1O14562 309 aaKnown RBP16.33■□□□□ 0.2
CLK3-227ENST00000570296 DANCRP0C864 163 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 CD8BP10966 210 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 EGR1P18146 543 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 MGAT1P26572 445 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 GSTM2P28161 218 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 CASP3P42574 277 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 KIR2DL2P43627 348 aaPredicted RBP16.33■□□□□ 0.2
CLK3-227ENST00000570296 PLA2G16P53816 162 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 IGLV3-21P80748 117 aaPredicted RBP16.33■□□□□ 0.2
CLK3-227ENST00000570296 ID2Q02363 134 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 LOXL1Q08397 574 aaPredicted RBP16.33■□□□□ 0.2
CLK3-227ENST00000570296 FGFBP1Q14512 234 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 ADPRMQ3LIE5 342 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 PDLIM3Q53GG5 364 aaPredicted RBP16.33■□□□□ 0.2
CLK3-227ENST00000570296 UGT3A1Q6NUS8 523 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 P4HA3Q7Z4N8 544 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 OR1J4Q8NGS1 313 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 FBXW5Q969U6 566 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 ZNF845Q96IR2 970 aaPredicted RBP16.33■□□□□ 0.2
CLK3-227ENST00000570296 DGAT2Q96PD7 388 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 COPS7BQ9H9Q2 264 aaPredicted RBP16.33■□□□□ 0.2
CLK3-227ENST00000570296 FBXO6Q9NRD1 293 aaPredicted RBP16.33■□□□□ 0.2
CLK3-227ENST00000570296 IFNKQ9P0W0 207 aa16.33■□□□□ 0.2
CLK3-227ENST00000570296 TRMT6Q9UJA5 497 aaKnown RBP16.33■□□□□ 0.2
CLK3-227ENST00000570296 IGHV4-30-2A0A087WSY4 118 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 HRKO00198 91 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms