RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PLIN5Q00G26 463 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 MGAT2Q10469 447 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 ZNF267Q14586 743 aaPredicted RBP18.21■□□□□ 0.51
CLN3-225ENST00000566824 AGAP7PQ5VUJ5 663 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 IL23RQ5VWK5 629 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 JMJD6Q6NYC1 403 aaPredicted RBP18.21■□□□□ 0.51
CLN3-225ENST00000566824 C16orf47Q6ZP98 133 aaPredicted RBP18.21■□□□□ 0.51
CLN3-225ENST00000566824 FNDC5Q8NAU1 212 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 LSM14AQ8ND56 463 aaKnown RBP18.21■□□□□ 0.51
CLN3-225ENST00000566824 SIMC1Q8NDZ2 872 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 OR14A16Q8NHC5 309 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 THAP3Q8WTV1 239 aaPredicted RBP18.21■□□□□ 0.51
CLN3-225ENST00000566824 DYDC1Q8WWB3 177 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 SENP5Q96HI0 755 aaPredicted RBP18.21■□□□□ 0.51
CLN3-225ENST00000566824 AGAP4Q96P64 663 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 WDR55Q9H6Y2 383 aaPredicted RBP18.21■□□□□ 0.51
CLN3-225ENST00000566824 LIN28AQ9H9Z2 209 aaKnown RBP18.21■□□□□ 0.51
CLN3-225ENST00000566824 PLA2G3Q9NZ20 509 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 GOLGA8QA0A0J9YX86 632 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 GOLGA8OA6NCC3 632 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 TMEM200CA6NKL6 621 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 GOLGA8NF8WBI6 632 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 ATP8B1O43520 1251 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 IGKV3-11P04433 115 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 PORP16435 677 aaPredicted RBP18.2■□□□□ 0.5
CLN3-225ENST00000566824 ERVK-8P63133 956 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 PTGR1Q14914 329 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 HEPACAMQ14CZ8 416 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 ZNF385BQ569K4 471 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 CRB2Q5IJ48 1285 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 IRAK1BP1Q5VVH5 260 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 FAM111BQ6SJ93 734 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 ISLR2Q6UXK2 745 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 FAM47EQ6ZV65 393 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 RBMXL3Q8N7X1 1067 aaKnown RBP18.2■□□□□ 0.5
CLN3-225ENST00000566824 MORN4Q8NDC4 146 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 ADCY4Q8NFM4 1077 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 RIT1Q92963 219 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 RBM18Q96H35 190 aaKnown RBP18.2■□□□□ 0.5
CLN3-225ENST00000566824 MFRPQ9BY79 579 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 CXorf21Q9HAI6 301 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 ERVK-19Q9WJR5 959 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 TMED5Q9Y3A6 229 aa18.2■□□□□ 0.5
CLN3-225ENST00000566824 HDAC3O15379 428 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 S1PR1P21453 382 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 EPHA3P29320 983 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 SSTR4P31391 388 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 DIO3P55073 304 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 EMX2Q04743 252 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 NFATC3Q12968 1075 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 MFAP5Q13361 173 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 MPEG1Q2M385 716 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 NADK2Q4G0N4 442 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 SLC9B1Q4ZJI4 515 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 IGFL2Q6UWQ7 119 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 LARP4Q71RC2 724 aaKnown RBP eCLIP18.19■□□□□ 0.5
CLN3-225ENST00000566824 CCDC116Q8IYX3 515 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 OR1N1Q8NGS0 311 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 SUN3Q8TAQ9 357 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 DAZLQ92904 295 aaKnown RBP18.19■□□□□ 0.5
CLN3-225ENST00000566824 VMP1Q96GC9 406 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 MAGEB18Q96M61 343 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 C7orf26Q96N11 449 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 CNPPD1Q9BV87 410 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 CDCP1Q9H5V8 836 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 SLAMF7Q9NQ25 335 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 SLC35C2Q9NQQ7 365 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 ZNF451Q9Y4E5 1061 aa18.19■□□□□ 0.5
CLN3-225ENST00000566824 G6PDP11413 515 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 SFTPCP11686 197 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 COX7A2P14406 83 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 CSNK2A2P19784 350 aaPredicted RBP18.18■□□□□ 0.5
CLN3-225ENST00000566824 NT5EP21589 574 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 GSTM5P46439 218 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 CLCN2P51788 898 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 DUSP8Q13202 625 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 BIKQ13323 160 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 SPRED3Q2MJR0 410 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 PRICKLE4Q2TBC4 344 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 ACER2Q5QJU3 275 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 IKBIPQ70UQ0 350 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 HOMEZQ8IX15 550 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 BEST3Q8N1M1 668 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 KRTCAP2Q8N6L1 136 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 CATSPER1Q8NEC5 780 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 PIWIL2Q8TC59 973 aaKnown RBP18.18■□□□□ 0.5
CLN3-225ENST00000566824 FBXL20Q96IG2 436 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 DEFB126Q9BYW3 111 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 ANKRA2Q9H9E1 313 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 MED4Q9NPJ6 270 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 MAT2BQ9NZL9 334 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 EHD3Q9NZN3 535 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 PSME2Q9UL46 239 aa18.18■□□□□ 0.5
CLN3-225ENST00000566824 SYNDIG1LA6NDD5 238 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 GABRR3A8MPY1 467 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 MYO1GB0I1T2 1018 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 WDPCPO95876 746 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 ATP1B1P05026 303 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 ALDOCP09972 364 aaKnown RBP18.17■□□□□ 0.5
CLN3-225ENST00000566824 GALNSP34059 522 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms