RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 TMX2-CTNND1H3BSU7 103 aa28.71■■■□□ 2.19
CTCF-203ENST00000566078 CLDN4O14493 209 aa28.71■■■□□ 2.19
CTCF-203ENST00000566078 JRKO75564 520 aa28.71■■■□□ 2.19
CTCF-203ENST00000566078 ISXQ2M1V0 245 aa28.71■■■□□ 2.19
CTCF-203ENST00000566078 LARP7Q4G0J3 582 aaKnown RBP eCLIP28.71■■■□□ 2.19
CTCF-203ENST00000566078 DHRS13Q6UX07 377 aa28.71■■■□□ 2.19
CTCF-203ENST00000566078 TMEM107Q6UX40 140 aa28.71■■■□□ 2.19
CTCF-203ENST00000566078 FBXO8Q9NRD0 319 aa28.71■■■□□ 2.19
CTCF-203ENST00000566078 EGFL7Q9UHF1 273 aa28.71■■■□□ 2.19
CTCF-203ENST00000566078 LOXL2Q9Y4K0 774 aa28.71■■■□□ 2.19
CTCF-203ENST00000566078 DLL1O00548 723 aa28.7■■■□□ 2.19
CTCF-203ENST00000566078 CSO75390 466 aaKnown RBP28.7■■■□□ 2.19
CTCF-203ENST00000566078 GPX2P18283 190 aa28.7■■■□□ 2.19
CTCF-203ENST00000566078 SOX11P35716 441 aa28.7■■■□□ 2.19
CTCF-203ENST00000566078 OR4D2P58180 307 aa28.7■■■□□ 2.19
CTCF-203ENST00000566078 ABHD18Q0P651 414 aa28.7■■■□□ 2.19
CTCF-203ENST00000566078 BNIP2Q12982 314 aa28.7■■■□□ 2.19
CTCF-203ENST00000566078 FLOT2Q14254 428 aa28.7■■■□□ 2.19
CTCF-203ENST00000566078 DDX59Q5T1V6 619 aaKnown RBP eCLIP28.7■■■□□ 2.19
CTCF-203ENST00000566078 OR2T12Q8NG77 320 aa28.7■■■□□ 2.19
CTCF-203ENST00000566078 OR1F2PQ96R84 312 aa28.7■■■□□ 2.19
CTCF-203ENST00000566078 FAM220BPB1ANY3 271 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 CTNSO60931 367 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 KRT75O95678 551 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 MT-CO3P00414 261 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 CCT3P49368 545 aaKnown RBP28.69■■■□□ 2.18
CTCF-203ENST00000566078 LIMK1P53667 647 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 SZRD1Q7Z422 152 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 CALHM3Q86XJ0 350 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 ADCY4Q8NFM4 1077 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 MAGED4Q96JG8 741 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 EPS8L2Q9H6S3 715 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 LANCL2Q9NS86 450 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 SLC39A1Q9NY26 324 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 B4E171 279 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 ACOT8O14734 319 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 HTR1EP28566 365 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 TSPAN7P41732 249 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 MC3RP41968 323 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 ERFP50548 548 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 GZMMP51124 257 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 HSD17B7P56937 341 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 ACTR3P61158 418 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 BTG2P78543 158 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 STX4Q12846 297 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 CYP51A1Q16850 503 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 SAXO2Q658L1 398 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 TMEM64Q6YI46 380 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 OR52N2Q8NGI0 321 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 SFXN5Q8TD22 340 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 NEURL3Q96EH8 262 aa28.69■■■□□ 2.18
CTCF-203ENST00000566078 TGFBR3LH3BV60 316 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 ENTPD5O75356 428 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 BCAS2O75934 225 aaPredicted RBP28.68■■■□□ 2.18
CTCF-203ENST00000566078 CASP9P55211 416 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 TRAP1Q12931 704 aaKnown RBP28.68■■■□□ 2.18
CTCF-203ENST00000566078 TP53BP2Q13625 1128 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 RGNQ15493 299 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 COX15Q7KZN9 410 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 SERPINA11Q86U17 422 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 RNF130Q86XS8 419 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 HIPK4Q8NE63 616 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 KAT2AQ92830 837 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 PMEPA1Q969W9 287 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 DEPDC7Q96QD5 511 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 RAD21L1Q9H4I0 556 aa28.68■■■□□ 2.18
CTCF-203ENST00000566078 MKKSQ9NPJ1 570 aaPredicted RBP28.68■■■□□ 2.18
CTCF-203ENST00000566078 ZCCHC3Q9NUD5 404 aaKnown RBP28.68■■■□□ 2.18
CTCF-203ENST00000566078 OR2W5A6NFC9 320 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 CPNE3O75131 537 aaKnown RBP28.67■■■□□ 2.18
CTCF-203ENST00000566078 ATP1B1P05026 303 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 ITIH1P19827 911 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 MAOAP21397 527 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 CRATP43155 626 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 MVDP53602 400 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 COX20Q5RI15 118 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 MFSD4BQ5TF39 518 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 HES3Q5TGS1 186 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 SLCO6A1Q86UG4 719 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 ZC3H7AQ8IWR0 971 aaKnown RBP28.67■■■□□ 2.18
CTCF-203ENST00000566078 ELP4Q96EB1 424 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 LIN37Q96GY3 246 aaPredicted RBP28.67■■■□□ 2.18
CTCF-203ENST00000566078 SLC22A11Q9NSA0 550 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 GPATCH2Q9NW75 528 aa28.67■■■□□ 2.18
CTCF-203ENST00000566078 BMP10O95393 424 aa28.66■■■□□ 2.18
CTCF-203ENST00000566078 STAMBPO95630 424 aa28.66■■■□□ 2.18
CTCF-203ENST00000566078 NT5EP21589 574 aa28.66■■■□□ 2.18
CTCF-203ENST00000566078 IL10P22301 178 aa28.66■■■□□ 2.18
CTCF-203ENST00000566078 IGLV3-21P80748 117 aaPredicted RBP28.66■■■□□ 2.18
CTCF-203ENST00000566078 MRPS35P82673 323 aaKnown RBP28.66■■■□□ 2.18
CTCF-203ENST00000566078 VAC14Q08AM6 782 aa28.66■■■□□ 2.18
CTCF-203ENST00000566078 CCNIQ14094 377 aa28.66■■■□□ 2.18
CTCF-203ENST00000566078 RAB11FIP2Q7L804 512 aa28.66■■■□□ 2.18
CTCF-203ENST00000566078 C6orf120Q7Z4R8 191 aa28.66■■■□□ 2.18
CTCF-203ENST00000566078 PTRH1Q86Y79 214 aaKnown RBP28.66■■■□□ 2.18
CTCF-203ENST00000566078 BHLHE22Q8NFJ8 381 aaPredicted RBP28.66■■■□□ 2.18
CTCF-203ENST00000566078 MOAP1Q96BY2 351 aa28.66■■■□□ 2.18
CTCF-203ENST00000566078 REXO5Q96IC2 774 aaKnown RBP28.66■■■□□ 2.18
CTCF-203ENST00000566078 CHST8Q9H2A9 424 aa28.66■■■□□ 2.18
CTCF-203ENST00000566078 MUC13Q9H3R2 512 aa28.66■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms