RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 PRKRAO75569 313 aaKnown RBP15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 TOXO94900 526 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 AIFM1O95831 613 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 CLPSP04118 112 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 COL6A2P12110 1019 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 ACVR2AP27037 513 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 NEK2P51955 445 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 SLC10A1Q14973 349 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 EBPQ15125 230 aaKnown RBP15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 UAP1Q16222 522 aaPredicted RBP15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 WHAMMP3Q1A5X7 153 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 UBAP2Q5T6F2 1119 aaKnown RBP15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 CYP20A1Q6UW02 462 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 SLC29A4Q7RTT9 530 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 LRRC25Q8N386 305 aaPredicted RBP15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 FBXW8Q8N3Y1 598 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 MMGT1Q8N4V1 131 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 PTGR2Q8N8N7 351 aaPredicted RBP15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 ZNF441Q8N8Z8 693 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 RIT1Q92963 219 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 WWTR1Q9GZV5 400 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 VPS11Q9H270 941 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 NOL11Q9H8H0 719 aaKnown RBP15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 WDR41Q9HAD4 459 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 PROK2Q9HC23 129 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 SEMA4BQ9NPR2 832 aaPredicted RBP15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 PNPLA3Q9NST1 481 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 MTRF1LQ9UGC7 380 aaKnown RBP15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 ADAM29Q9UKF5 820 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 PCDHGB3Q9Y5G1 929 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 LIPGQ9Y5X9 500 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 CHCHD2Q9Y6H1 151 aaPredicted RBP15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 ANKRD33BA6NCL7 494 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 HOXD4P09016 255 aaPredicted RBP15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 SERPINB3P29508 390 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 PIGAP37287 484 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 SERPINB9P50453 376 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 NUP107P57740 925 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 HERVK_113P63132 956 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 ERVK-8P63133 956 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 PMPCAQ10713 525 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 TRAF3Q13114 568 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 ZNF267Q14586 743 aaPredicted RBP15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 NTRK2Q16620 822 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 TSNAXIP1Q2TAA8 658 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 GGTA1PQ4G0N0 100 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 FRG2Q64ET8 278 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 OR52E8Q6IFG1 317 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 MEX3BQ6ZN04 569 aaKnown RBP15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 RNF111Q6ZNA4 994 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 OR52B6Q8NGF0 335 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 TP53INP1Q96A56 240 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 FRG2BQ96QU4 278 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 TTYH2Q9BSA4 534 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 CNPPD1Q9BV87 410 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 ERVK-6Q9BXR3 956 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 CDC42EP4Q9H3Q1 356 aaKnown RBP15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 ZNF703Q9H7S9 590 aaPredicted RBP15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 CXorf21Q9HAI6 301 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 MCCC2Q9HCC0 563 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 ZBTB26Q9HCK0 441 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 ACKR4Q9NPB9 350 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 NPDC1Q9NQX5 325 aaPredicted RBP15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 ZNF358Q9NW07 568 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 QPCTLQ9NXS2 382 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 DMGDHQ9UI17 866 aaKnown RBP15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 ZNF180Q9UJW8 692 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 PCTPQ9UKL6 214 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 CNOT11Q9UKZ1 510 aaKnown RBP15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 ERVK-19Q9WJR5 959 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 FAM215AQ9Y5M1 114 aa15.86■□□□□ 0.13
VPS9D1-203ENST00000563798 PHF3Q92576 2039 aaKnown RBP15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 GLOD5A6NK44 160 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 OR10H2O60403 315 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 WDR1O75083 606 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 INHBAP08476 426 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 CELA3AP09093 270 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 POU3F2P20265 443 aaPredicted RBP15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 CNTFP26441 200 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 MSX1P28360 303 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 MAN2A2P49641 1150 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 FUT7Q11130 342 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 RTL6Q6ICC9 239 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 MYRIPQ8NFW9 859 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 OR5M3Q8NGP4 307 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 TRPC4APQ8TEL6 797 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 CHTF18Q8WVB6 975 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 UCN3Q969E3 161 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 SARAFQ96BY9 339 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 CDK15Q96Q40 435 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 C1QTNF3Q9BXJ4 246 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 ZFP64Q9NPA5 681 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 KCNJ16Q9NPI9 418 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 AHSPQ9NZD4 102 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 XPR1Q9UBH6 696 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 BOKQ9UMX3 212 aaPredicted RBP15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 IKBKGQ9Y6K9 419 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 EML6Q6ZMW3 1958 aa15.85■□□□□ 0.13
VPS9D1-203ENST00000563798 DNAJC13O75165 2243 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms