RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 TBL3Q12788 808 aaKnown RBP14.5□□□□□ -0.09
VPS39-203ENST00000561797 LCP2Q13094 533 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 C3AR1Q16581 482 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 SPRED3Q2MJR0 410 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 OPN5Q6U736 354 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 ZYG11AQ6WRX3 759 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 RNF111Q6ZNA4 994 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 SH2D5Q6ZV89 423 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 TDRPQ86YL5 185 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 MMP21Q8N119 569 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 CCDC63Q8NA47 563 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 POGLUT1Q8NBL1 392 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 OR4K14Q8NGD5 310 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 OR2W6PQ8NHA6 318 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 CCDC126Q96EE4 140 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 GAL3ST4Q96RP7 486 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 KCNA7Q96RP8 456 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 GSTO2Q9H4Y5 243 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 PPCSQ9HAB8 311 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 MID1IP1Q9NPA3 183 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 DEPPQ9NTK1 212 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 VPS29Q9UBQ0 182 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 GRID1Q9ULK0 1009 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 STK38LQ9Y2H1 464 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 ZNF407Q9C0G0 2248 aa14.5□□□□□ -0.09
VPS39-203ENST00000561797 PINLYPA6NC86 204 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 COPEO14579 308 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 HS6ST1O60243 411 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 CDC40O60508 579 aaKnown RBP eCLIP14.49□□□□□ -0.09
VPS39-203ENST00000561797 GUCY1B2O75343 617 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 ERAL1O75616 437 aaKnown RBP14.49□□□□□ -0.09
VPS39-203ENST00000561797 ABOP16442 354 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 SSTR4P31391 388 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 GALNSP34059 522 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 PTGER1P34995 402 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 DEKP35659 375 aaKnown RBP14.49□□□□□ -0.09
VPS39-203ENST00000561797 CA7P43166 264 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 XKP51811 444 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 PKNOX1P55347 436 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 PLGLB1Q02325 96 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 CSTF3Q12996 717 aaKnown RBP14.49□□□□□ -0.09
VPS39-203ENST00000561797 MPEG1Q2M385 716 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.49□□□□□ -0.09
VPS39-203ENST00000561797 CCDC153Q494R4 210 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 PIGGQ5H8A4 983 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 SCIMPQ6UWF3 145 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 RTL4Q6ZR62 310 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 SLC29A4Q7RTT9 530 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 SPPL2CQ8IUH8 684 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 C4orf33Q8N1A6 199 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 GHDCQ8N2G8 530 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 NUBPLQ8TB37 319 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 SLC22A8Q8TCC7 542 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 CHTF18Q8WVB6 975 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 TM4SF18Q96CE8 201 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.49□□□□□ -0.09
VPS39-203ENST00000561797 SUCOQ9UBS9 1254 aaKnown RBP14.49□□□□□ -0.09
VPS39-203ENST00000561797 TINAGQ9UJW2 476 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 PCDHA9Q9Y5H5 950 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 DNAJC13O75165 2243 aa14.49□□□□□ -0.09
VPS39-203ENST00000561797 NCOA6Q14686 2063 aaPredicted RBP14.48□□□□□ -0.09
VPS39-203ENST00000561797 A0A0G2JMM0 328 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 A0A1W2PPB8 328 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 A0A1W2PRS3 328 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 C1orf226A1L170 272 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 KIR3DP1A8MWS1 328 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 PLIN3O60664 434 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 CDH16O75309 829 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 ESRRBO95718 433 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 CLPSP04118 112 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 ENO1P06733 434 aaKnown RBP14.48□□□□□ -0.09
VPS39-203ENST00000561797 CT62P0C5K7 136 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 HSD3B1P14060 373 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 CPMP14384 443 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 KRT4P19013 534 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 CNR1P21554 472 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 NT5EP21589 574 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 HSD3B2P26439 372 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 CRHR1P34998 444 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 ALDH9A1P49189 494 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 NAGLUP54802 743 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 SLC37A1P57057 533 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 HMGCS1Q01581 520 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 BTKQ06187 659 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 ZFP62Q8NB50 900 aaPredicted RBP14.48□□□□□ -0.09
VPS39-203ENST00000561797 OR2M7Q8NG81 312 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 OR52N2Q8NGI0 321 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 C16orf52Q8NHV5 167 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 AGAP11Q8TF27 550 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 ACPTQ9BZG2 426 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 DEFB127Q9H1M4 99 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 CXorf21Q9HAI6 301 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.48□□□□□ -0.09
VPS39-203ENST00000561797 ZNF835Q9Y2P0 537 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 V9GYY5 206 aaPredicted RBP14.48□□□□□ -0.09
VPS39-203ENST00000561797 PCNX1Q96RV3 2341 aa14.48□□□□□ -0.09
VPS39-203ENST00000561797 CACNA1DQ01668 2161 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 CCDC151A5D8V7 595 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 FAM166BA8MTA8 275 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 UBFD1O14562 309 aaKnown RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms