RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 BRINP2Q9C0B6 783 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 LHPPQ9H008 270 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 RABEP2Q9H5N1 569 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 MMP25Q9NPA2 562 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 AIG1Q9NVV5 245 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 TAS2R7Q9NYW3 318 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 SH3BP4Q9P0V3 963 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 KLHL14Q9P2G3 628 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 BAIAP2L1Q9UHR4 511 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 ATP6V1HQ9UI12 483 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 TEKT2Q9UIF3 430 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 DCTN4Q9UJW0 460 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 CES1P1Q9UKY3 287 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 PPIEQ9UNP9 301 aaKnown RBP9.42□□□□□ -0.9
USP3-216ENST00000559873 CLDN16Q9Y5I7 305 aa9.42□□□□□ -0.9
USP3-216ENST00000559873 A8MUA0 341 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 E9PBE3 544 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 TGFBR3LH3BV60 316 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 BCAS2O75934 225 aaPredicted RBP9.41□□□□□ -0.9
USP3-216ENST00000559873 IFI6P09912 130 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 LSP1P33241 339 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 FEN1P39748 380 aaKnown RBP9.41□□□□□ -0.9
USP3-216ENST00000559873 KIR3DL1P43629 444 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 PGDP52209 483 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 NCBP2P52298 156 aaKnown RBP eCLIP9.41□□□□□ -0.91e-6■■■■□ 23.8
USP3-216ENST00000559873 SOX8P57073 446 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 SRSF11Q05519 484 aaKnown RBP9.41□□□□□ -0.9
USP3-216ENST00000559873 LRRC74AQ0VAA2 488 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 CHAF1BQ13112 559 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 CEBPEQ15744 281 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 TBR1Q16650 682 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 PDCD4Q53EL6 469 aaKnown RBP9.41□□□□□ -0.9
USP3-216ENST00000559873 C19orf48Q6RUI8 117 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 MMP21Q8N119 569 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 LGI4Q8N135 537 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 MIER2Q8N344 545 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 VWA5B2Q8N398 1253 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 SLC5A8Q8N695 610 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 VPS37AQ8NEZ2 397 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 ZNF675Q8TD23 568 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 TM9SF4Q92544 642 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 TESCQ96BS2 214 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 CNRIP1Q96F85 164 aaPredicted RBP9.41□□□□□ -0.9
USP3-216ENST00000559873 FBXL20Q96IG2 436 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 THOC3Q96J01 351 aaKnown RBP9.41□□□□□ -0.9
USP3-216ENST00000559873 EGLN2Q96KS0 407 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 IMMP1LQ96LU5 166 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 EBF4Q9BQW3 602 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 CNPPD1Q9BV87 410 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 TMEM120AQ9BXJ8 343 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 BHLHE41Q9C0J9 482 aaPredicted RBP9.41□□□□□ -0.9
USP3-216ENST00000559873 OR8D2Q9GZM6 311 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 ADNPQ9H2P0 1102 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 KCNK13Q9HB14 408 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 NEUROD4Q9HD90 331 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 RYDENQ9NUL5 291 aaKnown RBP9.41□□□□□ -0.9
USP3-216ENST00000559873 GPR83Q9NYM4 423 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 ZIM2Q9NZV7 527 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 ABI3Q9P2A4 366 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 CFL2Q9Y281 166 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 LAMA5O15230 3695 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 SPTA1P02549 2419 aa9.41□□□□□ -0.9
USP3-216ENST00000559873 ZFHX4Q86UP3 3567 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 TRBV11-1A0A0K0K1C0 115 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 OR6C76A6NM76 312 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 MYO1GB0I1T2 1018 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 ERVH48-1M5A8F1 160 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 PRAMEF2O60811 474 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 ALDOCP09972 364 aaKnown RBP9.4□□□□□ -0.9
USP3-216ENST00000559873 SFTPCP11686 197 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 GPC1P35052 558 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 ATP4BP51164 291 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 CCL11P51671 97 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 POLE2P56282 527 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 SQLEQ14534 574 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 ZNF267Q14586 743 aaPredicted RBP9.4□□□□□ -0.9
USP3-216ENST00000559873 MYBPC3Q14896 1274 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 CRB2Q5IJ48 1285 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 ANXA8L1Q5VT79 327 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 AGAP7PQ5VUJ5 663 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 METTL21CQ5VZV1 264 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 HSDL2Q6YN16 418 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 RNF111Q6ZNA4 994 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 SLC29A4Q7RTT9 530 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 CAMKMTQ7Z624 323 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 CPLX4Q7Z7G2 160 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 HPS6Q86YV9 775 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 OR7G1Q8NGA0 311 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 OR5L2Q8NGL0 311 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 OR1N1Q8NGS0 311 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 SLC2A12Q8TD20 617 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 PTPMT1Q8WUK0 201 aaPredicted RBP9.4□□□□□ -0.9
USP3-216ENST00000559873 EXTL1Q92935 676 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 NCLNQ969V3 563 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 PPWD1Q96BP3 646 aaKnown RBP9.4□□□□□ -0.9
USP3-216ENST00000559873 THOC1Q96FV9 657 aaKnown RBP9.4□□□□□ -0.9
USP3-216ENST00000559873 ZNF681Q96N22 645 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 AGAP4Q96P64 663 aa9.4□□□□□ -0.9
USP3-216ENST00000559873 ZNF317Q96PQ6 595 aaPredicted RBP9.4□□□□□ -0.9
USP3-216ENST00000559873 DUSP26Q9BV47 211 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms