RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 DEFB126Q9BYW3 111 aa6.84□□□□□ -1.31
SPG11-213ENST00000558988 RHOJQ9H4E5 214 aa6.84□□□□□ -1.31
SPG11-213ENST00000558988 COPS7BQ9H9Q2 264 aaPredicted RBP6.84□□□□□ -1.31
SPG11-213ENST00000558988 LIN28AQ9H9Z2 209 aaKnown RBP6.84□□□□□ -1.31
SPG11-213ENST00000558988 PELI2Q9HAT8 420 aa6.84□□□□□ -1.31
SPG11-213ENST00000558988 NECTIN3Q9NQS3 549 aa6.84□□□□□ -1.31
SPG11-213ENST00000558988 SMYD2Q9NRG4 433 aa6.84□□□□□ -1.31
SPG11-213ENST00000558988 CD274Q9NZQ7 290 aa6.84□□□□□ -1.31
SPG11-213ENST00000558988 OARD1Q9Y530 152 aa6.84□□□□□ -1.31
SPG11-213ENST00000558988 COL12A1Q99715 3063 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 TLDC2A0PJX2 215 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 ANKDD1BA6NHY2 528 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 SAGE2PA6NJ88 616 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 SUPT3HB4E1H0 165 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 G3V3Y1 287 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 FCHO1O14526 889 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 RAD51CO43502 376 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 B3GALT2O43825 422 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 SUPT3HO75486 399 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 FAM155BO75949 473 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 SP1P08047 785 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 SERPINA6P08185 405 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 CYC1P08574 325 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 PCNAP12004 261 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 PRF1P14222 555 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 STMN1P16949 149 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 ZNF24P17028 368 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 GNAZP19086 355 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 CERS1P27544 350 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 HNRNPH1P31943 449 aaKnown RBP6.83□□□□□ -1.32
SPG11-213ENST00000558988 CA7P43166 264 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 CYB561P49447 251 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 HNRNPFP52597 415 aaKnown RBP6.83□□□□□ -1.32
SPG11-213ENST00000558988 STXBP1P61764 594 aaKnown RBP6.83□□□□□ -1.32
SPG11-213ENST00000558988 ID2Q02363 134 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 DDX39BQ13838 428 aaKnown RBP6.83□□□□□ -1.32
SPG11-213ENST00000558988 EFTUD2Q15029 972 aaKnown RBP eCLIP6.83□□□□□ -1.32
SPG11-213ENST00000558988 XKR6Q5GH73 641 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 SLC25A25Q6KCM7 469 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 H3F3CQ6NXT2 135 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 TRIM40Q6P9F5 258 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 TMIGD1Q6UXZ0 262 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 C16orf47Q6ZP98 133 aaPredicted RBP6.83□□□□□ -1.32
SPG11-213ENST00000558988 RAPH1Q70E73 1250 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 GPSM1Q86YR5 675 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 MYLK4Q86YV6 388 aaPredicted RBP6.83□□□□□ -1.32
SPG11-213ENST00000558988 KLHDC8AQ8IYD2 350 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 KRT78Q8N1N4 520 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 TMEM156Q8N614 296 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 CPSF7Q8N684 471 aaKnown RBP6.83□□□□□ -1.32
SPG11-213ENST00000558988 HORMAD2Q8N7B1 307 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 PPM1NQ8N819 430 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 ITLN2Q8WWU7 325 aaPredicted RBP6.83□□□□□ -1.32
SPG11-213ENST00000558988 CDKL2Q92772 493 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 TMEM125Q96AQ2 219 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 RHBDF1Q96CC6 855 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 CSF3RQ99062 836 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 TMEM79Q9BSE2 394 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 YIPF4Q9BSR8 244 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 AICDAQ9GZX7 198 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 PRTFDC1Q9NRG1 225 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 DNAJC11Q9NVH1 559 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 NSMCE4AQ9NXX6 385 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 ERVK-11Q9UQG0 969 aa6.83□□□□□ -1.32
SPG11-213ENST00000558988 DOPEY1Q5JWR5 2465 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 A0A088AWK7 358 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 TCRBV9S1A1TA0A576 114 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 TCRBV16S1A1N1A0A5B0 115 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 SAP18O00422 153 aaKnown RBP6.82□□□□□ -1.32
SPG11-213ENST00000558988 RTCAO00442 366 aaKnown RBP6.82□□□□□ -1.32
SPG11-213ENST00000558988 TFECO14948 347 aaPredicted RBP6.82□□□□□ -1.32
SPG11-213ENST00000558988 TP73O15350 636 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 HNRNPRO43390 633 aaKnown RBP6.82□□□□□ -1.32
SPG11-213ENST00000558988 ITGA10O75578 1167 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 NEURL1O76050 574 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 PDE9AO76083 593 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 MLYCDO95822 493 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 TNNI3P19429 210 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 ZNF10P21506 573 aaPredicted RBP6.82□□□□□ -1.32
SPG11-213ENST00000558988 HTR1EP28566 365 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 DNAJA1P31689 397 aaKnown RBP6.82□□□□□ -1.32
SPG11-213ENST00000558988 PTGER1P34995 402 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 MSH2P43246 934 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 HNMTP50135 292 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 MEOX1P50221 254 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 CLCN2P51788 898 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 PLTPP55058 493 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 CDKL1Q00532 357 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 IRF8Q02556 426 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 BMPR2Q13873 1038 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 RUNX2Q13950 521 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 TGFBIQ15582 683 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 OR4D1Q15615 310 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 UAP1Q16222 522 aaPredicted RBP6.82□□□□□ -1.32
SPG11-213ENST00000558988 PDK4Q16654 411 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 NIPAL1Q6NVV3 410 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 QSOX2Q6ZRP7 698 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 C3orf62Q6ZUJ4 267 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 CMC1Q7Z7K0 106 aa6.82□□□□□ -1.32
SPG11-213ENST00000558988 MCEMP1Q8IX19 187 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms