RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 FAM72AQ5TYM5 149 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 SULT1C3Q6IMI6 304 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 FAM72DQ6L9T8 149 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 SLC25A24Q6NUK1 477 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 STEAP1BQ6NZ63 245 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 OLFM4Q6UX06 510 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 KIF6Q6ZMV9 814 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 PRSS48Q7RTY5 328 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 ADCK1Q86TW2 530 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 ZNF329Q86UD4 541 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 C17orf64Q86WR6 236 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 FAM72BQ86X60 149 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 GRAMD2AQ8IUY3 354 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 CNPY4Q8N129 248 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 ZNRF1Q8ND25 227 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 CHDHQ8NE62 594 aaPredicted RBP1.38□□□□□ -2.19
USP3-209ENST00000558925 ZNF397Q8NF99 534 aaPredicted RBP1.38□□□□□ -2.19
USP3-209ENST00000558925 OR5T2Q8NGG2 359 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 OR4F5Q8NH21 305 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 OR2T6Q8NHC8 308 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 C8orf46Q8TAG6 207 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 FAM76AQ8TAV0 307 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 CCDC110Q8TBZ0 833 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 DNASE2BQ8WZ79 361 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 SYAP1Q96A49 352 aaPredicted RBP1.38□□□□□ -2.19
USP3-209ENST00000558925 DTNBP1Q96EV8 351 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 C14orf79Q96F83 325 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 ATXN7L3BQ96GX2 97 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 CBWD1Q9BRT8 395 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 THUMPD2Q9BTF0 503 aaKnown RBP1.38□□□□□ -2.19
USP3-209ENST00000558925 PINK1Q9BXM7 581 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 FTHL17Q9BXU8 183 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 HOXD1Q9GZZ0 328 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 ECT2Q9H8V3 914 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 VIPAS39Q9H9C1 493 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 CALHM2Q9HA72 323 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 KCNK13Q9HB14 408 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 FGF22Q9HCT0 170 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 PALMDQ9NP74 551 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 SLC35D1Q9NTN3 355 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 LHX3Q9UBR4 397 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 KLK11Q9UBX7 282 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 CHRNA9Q9UGM1 479 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 TBK1Q9UHD2 729 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 TEKT2Q9UIF3 430 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 ERRFI1Q9UJM3 462 aaPredicted RBP1.38□□□□□ -2.19
USP3-209ENST00000558925 GAB2Q9UQC2 676 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 MRPS2Q9Y399 296 aaKnown RBP1.38□□□□□ -2.19
USP3-209ENST00000558925 MRPS18CQ9Y3D5 142 aaKnown RBP1.38□□□□□ -2.19
USP3-209ENST00000558925 ZNF175Q9Y473 711 aa1.38□□□□□ -2.19
USP3-209ENST00000558925 RAD54L2Q9Y4B4 1467 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 A0A087WZY1 265 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP1.37□□□□□ -2.19
USP3-209ENST00000558925 IGHV3-38A0A0C4DH36 116 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 TRBV5-4A0A0C4DH59 114 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 A0A1B0GVY2 172 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 FAM230AA0A1W2PPH8 454 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 EME2A4GXA9 379 aaPredicted RBP1.37□□□□□ -2.19
USP3-209ENST00000558925 RNF222A6NCQ9 220 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 MEI4A8MW99 385 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 TMCO5BA8MYB1 307 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 NEDD8-MDP1E9PL57 170 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 H0YL77 283 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 LGALS8O00214 317 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 NR5A2O00482 541 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 TNFSF12O43508 249 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 SSX5O60225 188 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 PEX11AO75192 247 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 DUSP11O75319 330 aaKnown RBP1.37□□□□□ -2.19
USP3-209ENST00000558925 VPS26AO75436 327 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 CEACAM4O75871 244 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 NXPH2O95156 264 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 PRAMEF12O95522 483 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 OAS1P00973 400 aaKnown RBP1.37□□□□□ -2.19
USP3-209ENST00000558925 PTMAP06454 111 aaKnown RBP1.37□□□□□ -2.19
USP3-209ENST00000558925 HIST1H2AGP0C0S8 130 aaPredicted RBP1.37□□□□□ -2.19
USP3-209ENST00000558925 TSPY4P0CV99 314 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 TSPY10P0CW01 314 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 RALAP11233 206 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 TSPAN8P19075 237 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 ZNF10P21506 573 aaPredicted RBP1.37□□□□□ -2.19
USP3-209ENST00000558925 CCND2P30279 289 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 KIF5BP33176 963 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 RFC2P35250 354 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 PTGFRP43088 359 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 MAGEA4P43358 317 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 TSFMP43897 325 aaKnown RBP1.37□□□□□ -2.19
USP3-209ENST00000558925 SLC6A8P48029 635 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 SGSHP51688 502 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 ZNF131P52739 623 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 NDST2P52849 883 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 ABCE1P61221 599 aaKnown RBP1.37□□□□□ -2.19
USP3-209ENST00000558925 SSTP61278 116 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 OVGP1Q12889 678 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 ZNF177Q13360 481 aaPredicted RBP1.37□□□□□ -2.19
USP3-209ENST00000558925 SNX1Q13596 522 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 KIAA0141Q14154 515 aaPredicted RBP1.37□□□□□ -2.19
USP3-209ENST00000558925 INAQ16352 499 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 ECSCRQ19T08 205 aa1.37□□□□□ -2.19
USP3-209ENST00000558925 SGSM1Q2NKQ1 1148 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms