RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 ALKBH3Q96Q83 286 aaPredicted RBP2.33□□□□□ -2.04
SCFD1-218ENST00000556256 FAM213AQ9BRX8 229 aa2.33□□□□□ -2.04
SCFD1-218ENST00000556256 WWP1Q9H0M0 922 aa2.33□□□□□ -2.04
SCFD1-218ENST00000556256 CARD9Q9H257 536 aa2.33□□□□□ -2.04
SCFD1-218ENST00000556256 CXXC4Q9H2H0 198 aa2.33□□□□□ -2.04
SCFD1-218ENST00000556256 DBNDD1Q9H9R9 158 aa2.33□□□□□ -2.04
SCFD1-218ENST00000556256 NMUR1Q9HB89 426 aa2.33□□□□□ -2.04
SCFD1-218ENST00000556256 FAM212BQ9NTI7 297 aaPredicted RBP2.33□□□□□ -2.04
SCFD1-218ENST00000556256 ZCCHC3Q9NUD5 404 aaKnown RBP2.33□□□□□ -2.04
SCFD1-218ENST00000556256 PIGVQ9NUD9 493 aa2.33□□□□□ -2.04
SCFD1-218ENST00000556256 DDX28Q9NUL7 540 aaKnown RBP2.33□□□□□ -2.04
SCFD1-218ENST00000556256 EXOC7Q9UPT5 735 aa2.33□□□□□ -2.04
SCFD1-218ENST00000556256 SH3GLB1Q9Y371 365 aa2.33□□□□□ -2.04
SCFD1-218ENST00000556256 MRPS2Q9Y399 296 aaKnown RBP2.33□□□□□ -2.04
SCFD1-218ENST00000556256 FGD5Q6ZNL6 1462 aa2.33□□□□□ -2.04
SCFD1-218ENST00000556256 TRBV2A0A0J9YWF9 115 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 OR5H15A6NDH6 313 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 H0Y9J4 135 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 OGTO15294 1046 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 ZBTB14O43829 449 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 FRAT2O75474 233 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 BCAS2O75934 225 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 OR6B1O95007 311 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 GSTA2P09210 222 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 PCP11498 1178 aaKnown RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 P4HA1P13674 534 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 CNN1P51911 297 aaKnown RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 RPL27P61353 136 aaKnown RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 RBBP4Q09028 425 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 CBX3Q13185 183 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 ITPK1Q13572 414 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 CDC37Q16543 378 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 POM121L1PQ3SYA9 428 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 FAM182AQ5T1J6 154 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 RSBN1Q5VWQ0 802 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 TIPARPQ7Z3E1 657 aaKnown RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 PEX5LQ8IYB4 626 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 CD177Q8N6Q3 437 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 GVQW1Q8N7I0 195 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 OR52B6Q8NGF0 335 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 OR6M1Q8NGM8 313 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 RHOXF1Q8NHV9 184 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 URGCPQ8TCY9 931 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 MGARPQ8TDB4 240 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 PNPLA2Q96AD5 504 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 SERAC1Q96JX3 654 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 CAPNS2Q96L46 248 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 SPATA13Q96N96 652 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 NAP1L3Q99457 506 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 JPH2Q9BR39 696 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 CCDC28BQ9BUN5 200 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 GANQ9H2C0 597 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 DCLRE1BQ9H816 532 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 MARCH7Q9H992 704 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 PLEKHA3Q9HB20 300 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 IL19Q9UHD0 177 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 SPATA2Q9UM82 520 aa2.32□□□□□ -2.04
SCFD1-218ENST00000556256 TDRKHQ9Y2W6 561 aaKnown RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 SPAG9O60271 1321 aaKnown RBP2.32□□□□□ -2.04
SCFD1-218ENST00000556256 FBP2O00757 339 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 HAT1O14929 419 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 ZNF749O43361 778 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 KIAA0513O60268 411 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 LRP3O75074 770 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 CSO75390 466 aaKnown RBP2.31□□□□□ -2.04
SCFD1-218ENST00000556256 OR6A2O95222 327 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 CALCAP01258 141 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 CXCL10P02778 98 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 SFTPBP07988 381 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 TPBGLP0DKB5 382 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 AREGP15514 252 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 RPL9P32969 192 aaKnown RBP2.31□□□□□ -2.04
SCFD1-218ENST00000556256 TNFRSF4P43489 277 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 NT5C2P49902 561 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 CASP9P55211 416 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 KCNK10P57789 538 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 HERV-K104P63124 156 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 SRPXP78539 464 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 CCL14Q16627 93 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 MPPE1Q53F39 396 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 C1orf189Q5VU69 101 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 PRAMEF7Q5VXH5 474 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 NKAIN2Q5VXU1 208 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 ZNF730Q6ZMV8 503 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 MCM10Q7L590 875 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 SLC22A16Q86VW1 577 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 TBC1D10CQ8IV04 446 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 ZNRF1Q8ND25 227 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 OR52E1Q8NGJ3 308 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 P3H4Q92791 437 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 MRPL24Q96A35 216 aaKnown RBP2.31□□□□□ -2.04
SCFD1-218ENST00000556256 RAB39BQ96DA2 213 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 ZNF560Q96MR9 790 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 SPAG8Q99932 426 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-218ENST00000556256 ATF6BQ99941 703 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 TEX13AQ9BXU3 409 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-218ENST00000556256 OCR1Q9BZK8 76 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 TRPV6Q9H1D0 765 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 SLC26A1Q9H2B4 701 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 THAP9Q9H5L6 903 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms