RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 FBXL4Q9UKA2 621 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 C17orf105B2RV13 164 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 C9JVG2 144 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 PDPK1O15530 556 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 FAM107AO95990 144 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 HPP00738 406 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 ATP1B1P05026 303 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 NT5EP21589 574 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 NTSP30990 170 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 GALNSP34059 522 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 MPIP34949 423 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 KIR3DL1P43629 444 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 TMPRSS3P57727 454 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 SRSF11Q05519 484 aaKnown RBP11.44□□□□□ -0.58
SHMT2-209ENST00000553949 TERF2Q15554 542 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 DPY19L1Q2PZI1 675 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 PGS1Q32NB8 556 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 SPANXN4Q5MJ08 99 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 PAPD4Q6PIY7 484 aaKnown RBP11.44□□□□□ -0.58
SHMT2-209ENST00000553949 CCDC116Q8IYX3 515 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 CPSF7Q8N684 471 aaKnown RBP11.44□□□□□ -0.58
SHMT2-209ENST00000553949 OR8J2Q8NGG1 315 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 OR9I1Q8NGQ6 314 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 OR14A16Q8NHC5 309 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 SUN3Q8TAQ9 357 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 PTPMT1Q8WUK0 201 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-209ENST00000553949 RIT1Q92963 219 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 AMDHD1Q96NU7 426 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 DUSP26Q9BV47 211 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 BHLHE41Q9C0J9 482 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-209ENST00000553949 SLAMF7Q9NQ25 335 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 CLCA3PQ9Y6N3 262 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 NUP210LQ5VU65 1888 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 ZFHX4Q86UP3 3567 aa11.44□□□□□ -0.58
SHMT2-209ENST00000553949 CFAP47Q6ZTR5 3102 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 NSG1A0A0A6YYJ2 146 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 FAM234BA2RU67 622 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 SAGE2PA6NJ88 616 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 K7ENP7 123 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 S100A3P33764 101 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 PTGER1P34995 402 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 FRKP42685 505 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-209ENST00000553949 ZFP36L2P47974 494 aaKnown RBP11.43□□□□□ -0.58
SHMT2-209ENST00000553949 NCBP2P52298 156 aaKnown RBP eCLIP11.43□□□□□ -0.58
SHMT2-209ENST00000553949 VAC14Q08AM6 782 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 SPRED3Q2MJR0 410 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 FAM174BQ3ZCQ3 159 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 DCAF10Q5QP82 559 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 INO80CQ6PI98 192 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-209ENST00000553949 NATD1Q8N6N6 113 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 NFAM1Q8NET5 270 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-209ENST00000553949 OR9A2Q8NGT5 310 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 DOK4Q8TEW6 326 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 DAZLQ92904 295 aaKnown RBP11.43□□□□□ -0.58
SHMT2-209ENST00000553949 ZBED6CLQ96FA7 236 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-209ENST00000553949 IMMP1LQ96LU5 166 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 FER1L6-AS2Q96M78 137 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 TUBB6Q9BUF5 446 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 GLIPR2Q9H4G4 154 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 CXorf21Q9HAI6 301 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 ZNF160Q9HCG1 818 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 SAR1AQ9NR31 198 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 ACSS1Q9NUB1 689 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-209ENST00000553949 TMEM45AQ9NWC5 275 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 ZMIZ1Q9ULJ6 1067 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 POLHQ9Y253 713 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 MAN2B2Q9Y2E5 1009 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 ARL2BPQ9Y2Y0 163 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 ACACAQ13085 2346 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 CHD8Q9HCK8 2581 aa11.43□□□□□ -0.58
SHMT2-209ENST00000553949 URB1O60287 2271 aaKnown RBP11.42□□□□□ -0.58
SHMT2-209ENST00000553949 ARGFXA6NJG6 315 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 MASP2O00187 686 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 DYRK3O43781 588 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 CCDC22O60826 627 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 DDAH2O95865 285 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 IL6P05231 212 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 PGRP06401 933 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 EFNA1P20827 205 aaPredicted RBP11.42□□□□□ -0.58
SHMT2-209ENST00000553949 PGDP52209 483 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 POLR2JP52435 117 aaKnown RBP11.42□□□□□ -0.58
SHMT2-209ENST00000553949 DGKQP52824 942 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 MANFP55145 182 aaKnown RBP11.42□□□□□ -0.58
SHMT2-209ENST00000553949 WNT3P56703 355 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 SLC26A5P58743 744 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 PHC1P78364 1004 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 MGAT2Q10469 447 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 UBAP2LQ14157 1087 aaKnown RBP11.42□□□□□ -0.58
SHMT2-209ENST00000553949 MLC1Q15049 377 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 LTB4RQ15722 352 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 EXT1Q16394 746 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 PRICKLE4Q2TBC4 344 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 DEFB109BQ30KR1 87 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 AGKQ53H12 422 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 ZNF628Q5EBL2 1059 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 GKAP1Q5VSY0 366 aaPredicted RBP11.42□□□□□ -0.58
SHMT2-209ENST00000553949 ANXA8L1Q5VT79 327 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 PLAG1Q6DJT9 500 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 OR4F3Q6IEY1 312 aa11.42□□□□□ -0.58
SHMT2-209ENST00000553949 ZNF551Q7Z340 670 aaPredicted RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms