RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	ABHD2	P08910	425 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	GP1BB	P13224	206 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	GFAP	P14136	432 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	GRK2	P25098	689 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	CNTF	P26441	200 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	CERS1	P27544	350 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	TYK2	P29597	1187 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	MSH2	P43246	934 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	PIK3CG	P48736	1102 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	SERPINB9	P50453	376 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	TDGF1P3	P51864	188 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	PLA2G16	P53816	162 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	BTN3A2	P78410	334 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	BTG2	P78543	158 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	ACTN3	Q08043	901 aa	Predicted RBP	7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	PCBP2	Q15366	365 aa	Known RBP eCLIP	7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	EIF2S3L	Q2VIR3	472 aa	Known RBP	7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	TMEM35A	Q53FP2	167 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	TECRL	Q5HYJ1	363 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	ACER2	Q5QJU3	275 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	UBAP2	Q5T6F2	1119 aa	Known RBP	7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	ZNF324B	Q6AW86	544 aa	Predicted RBP	7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	GRHL2	Q6ISB3	625 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	MED27	Q6P2C8	311 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	ABHD17C	Q6PCB6	329 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	CRLF3	Q8IUI8	442 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	ZNF595	Q8IYB9	648 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	CEP112	Q8N8E3	955 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	MDS2	Q8NDY4	140 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	B3GNT7	Q8NFL0	401 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	ZNF473	Q8WTR7	871 aa	Known RBP	7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	NR4A3	Q92570	626 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	CLUHP3	Q96NS8	147 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	GPR78	Q96P69	363 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	TAAR6	Q96RI8	345 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	PAFAH2	Q99487	392 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	NPAS2	Q99743	824 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	BRINP2	Q9C0B6	783 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	LYRM4	Q9HD34	91 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	ADAP2	Q9NPF8	381 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	STMN3	Q9NZ72	180 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	ADGRE2	Q9UHX3	823 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	GPR160	Q9UJ42	338 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	ZNF180	Q9UJW8	692 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	ZNF490	Q9ULM2	529 aa	Predicted RBP	7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	TMCO1	Q9UM00	188 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	DAPP1	Q9UN19	280 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	PPIE	Q9UNP9	301 aa	Known RBP	7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	ZNF281	Q9Y2X9	895 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	CLDN16	Q9Y5I7	305 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	TNPO3	Q9Y5L0	923 aa	Known RBP	7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440	IKBKG	Q9Y6K9	419 aa		7.17	□□□□□ -1.26
SNHG1-223	ENST00000545440		A0A087WUV0	522 aa	Predicted RBP	7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440		A0A0G2JN53	185 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	WIPF3	A6NGB9	483 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	GABRR3	A8MPY1	467 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440		A8MUI8	341 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	FAM227A	F5H4B4	570 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	RASAL1	O95294	804 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	F10	P00742	488 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	CRYAB	P02511	175 aa	Known RBP	7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	PIK3CB	P42338	1070 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	ARFIP1	P53367	373 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	LIM2	P55344	173 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	PHEX	P78562	749 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	SLC13A2	Q13183	592 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	TUBA3C	Q13748	450 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	RUNX2	Q13950	521 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	OR1C1	Q15619	314 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	PFKFB4	Q16877	469 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	ZNF766	Q5HY98	468 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	LIPJ	Q5W064	366 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	FCRLB	Q6BAA4	426 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	TUBA3E	Q6PEY2	450 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	CCDC103	Q8IW40	242 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	CNPY4	Q8N129	248 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	KIF2B	Q8N4N8	673 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	HORMAD2	Q8N7B1	307 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	AMER2	Q8N7J2	671 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	FAM47B	Q8NA70	645 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	APCDD1L	Q8NCL9	501 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	NFAM1	Q8NET5	270 aa	Predicted RBP	7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	OR7G3	Q8NG95	312 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	IFT81	Q8WYA0	676 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	FBXW5	Q969U6	566 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	REPS1	Q96D71	796 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	CMTM7	Q96FZ5	175 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	VMP1	Q96GC9	406 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	SCMH1	Q96GD3	660 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	C5orf34	Q96MH7	638 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	CSF3R	Q99062	836 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	UTP23	Q9BRU9	249 aa	Known RBP	7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	CENPK	Q9BS16	269 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	TBCD	Q9BTW9	1192 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	VPS11	Q9H270	941 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	ACTR8	Q9H981	624 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	DMRT3	Q9NQL9	472 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	NECTIN3	Q9NQS3	549 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	PRDM7	Q9NQW5	492 aa		7.16	□□□□□ -1.26
SNHG1-223	ENST00000545440	PRTFDC1	Q9NRG1	225 aa		7.16	□□□□□ -1.26

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms