RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 CNTFP26441 200 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 BSGP35613 385 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 DNASE1L1P49184 302 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 TMED10P49755 219 aaKnown RBP12.11□□□□□ -0.47
RTN3-213ENST00000543552 SERPINB9P50453 376 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 CCNG1P51959 295 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 TLE4Q04727 773 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 PMPCAQ10713 525 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 FOXO1Q12778 655 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 IFT88Q13099 833 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 ZNF267Q14586 743 aaPredicted RBP12.11□□□□□ -0.47
RTN3-213ENST00000543552 WHAMMP3Q1A5X7 153 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 ZNF791Q3KP31 576 aaPredicted RBP12.11□□□□□ -0.47
RTN3-213ENST00000543552 GXYLT1Q4G148 440 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 TECRLQ5HYJ1 363 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 EMC4Q5J8M3 183 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 TBCELQ5QJ74 424 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 WLSQ5T9L3 541 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 HLA-DQA1Q5Y7H0 255 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 TTC19Q6DKK2 380 aaPredicted RBP12.11□□□□□ -0.47
RTN3-213ENST00000543552 MRM1Q6IN84 353 aaKnown RBP12.11□□□□□ -0.47
RTN3-213ENST00000543552 ZNF585AQ6P3V2 769 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 RELL1Q8IUW5 271 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 FBXW8Q8N3Y1 598 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 RNF175Q8N4F7 328 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 MARVELD2Q8N4S9 558 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 PTGR2Q8N8N7 351 aaPredicted RBP12.11□□□□□ -0.47
RTN3-213ENST00000543552 MYRIPQ8NFW9 859 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 TREX2Q9BQ50 279 aaPredicted RBP12.11□□□□□ -0.47
RTN3-213ENST00000543552 WWTR1Q9GZV5 400 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 MCCC2Q9HCC0 563 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 ZFP64Q9NPA5 681 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 PNPLA3Q9NST1 481 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 QPCTLQ9NXS2 382 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 TUBA8Q9NY65 449 aaPredicted RBP12.11□□□□□ -0.47
RTN3-213ENST00000543552 NINJ2Q9NZG7 142 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 ACAD8Q9UKU7 415 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 RNF11Q9Y3C5 154 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 ASB4Q9Y574 426 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 ANKRD17O75179 2603 aaKnown RBP12.11□□□□□ -0.47
RTN3-213ENST00000543552 CCDC168Q8NDH2 2452 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 ZNF407Q9C0G0 2248 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 POLQO75417 2590 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 TRGV5A0A0B4J1U4 118 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 ATP6AP2A0A1C7CYW4 349 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 HMX2A2RU54 273 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 FAM90A27PA6NNH2 459 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 STX16-NPEPL1H3BU86 382 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 STX16O14662 325 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 TP53I11O14683 189 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 TMPRSS11DO60235 418 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 GUCY1B2O75343 617 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 EEDO75530 441 aaKnown RBP12.1□□□□□ -0.47
RTN3-213ENST00000543552 ATP6AP2O75787 350 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 SIX3O95343 332 aaPredicted RBP12.1□□□□□ -0.47
RTN3-213ENST00000543552 AIFM1O95831 613 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 FBXO45P0C2W1 286 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 COL6A2P12110 1019 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 GABRA1P14867 456 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 PIK3R1P27986 724 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 NRG3P56975 720 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 SLC37A1P57057 533 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 NUP107P57740 925 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 RPP38P78345 283 aaKnown RBP12.1□□□□□ -0.47
RTN3-213ENST00000543552 EBPQ15125 230 aaKnown RBP12.1□□□□□ -0.47
RTN3-213ENST00000543552 FRG2Q64ET8 278 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 GALNT12Q8IXK2 581 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 CLYBLQ8N0X4 340 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 C17orf53Q8N3J3 647 aaPredicted RBP12.1□□□□□ -0.47
RTN3-213ENST00000543552 LIX1Q8N485 282 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 MNS1Q8NEH6 495 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 OR5M9Q8NGP3 310 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 OR10Q1Q8NGQ4 319 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 WDR20Q8TBZ3 569 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 SLC44A1Q8WWI5 657 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 ISL2Q96A47 359 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 GPR78Q96P69 363 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 FRG2BQ96QU4 278 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 LRRC1Q9BTT6 524 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 ZNF717Q9BY31 904 aaPredicted RBP12.1□□□□□ -0.47
RTN3-213ENST00000543552 FUT8Q9BYC5 575 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 ELOVL6Q9H5J4 265 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 ZNF703Q9H7S9 590 aaPredicted RBP12.1□□□□□ -0.47
RTN3-213ENST00000543552 NOL11Q9H8H0 719 aaKnown RBP12.1□□□□□ -0.47
RTN3-213ENST00000543552 SH2D2AQ9NP31 389 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 ADAM29Q9UKF5 820 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 PCDHGB3Q9Y5G1 929 aa12.1□□□□□ -0.47
RTN3-213ENST00000543552 DNAJC13O75165 2243 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 C2orf92A0A1B0GVN3 265 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 A0A1W2PR48 441 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 LRRC14BA6NHZ5 514 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 GLOD5A6NK44 160 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 HRKO00198 91 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 ZNF354AO60765 605 aaPredicted RBP12.09□□□□□ -0.47
RTN3-213ENST00000543552 PRKRAO75569 313 aaKnown RBP12.09□□□□□ -0.47
RTN3-213ENST00000543552 URI1O94763 535 aaPredicted RBP12.09□□□□□ -0.47
RTN3-213ENST00000543552 NADKO95544 446 aaPredicted RBP12.09□□□□□ -0.47
RTN3-213ENST00000543552 ACSL3O95573 720 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 IGFBP2P18065 325 aa12.09□□□□□ -0.47
RTN3-213ENST00000543552 MSX1P28360 303 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms