RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 IRF3Q14653 427 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 NFATC4Q14934 902 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 KIR2DS3Q14952 304 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 SLC25A30Q5SVS4 291 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 NDUFAF5Q5TEU4 345 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 MEDAGQ5VYS4 303 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 LAIR1Q6GTX8 287 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 C16orf87Q6PH81 154 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 TAGAPQ8N103 731 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 MINDY2Q8NBR6 621 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 OR5AK3PQ8NH89 298 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 TANKQ92844 425 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 MSANTD3Q96H12 275 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 FUZQ9BT04 418 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 COPS4Q9BT78 406 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 SORBS1Q9BX66 1292 aaKnown RBP9.34□□□□□ -0.91
SS18-205ENST00000542420 CDCA4Q9BXL8 241 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 C8orf33Q9H7E9 229 aaPredicted RBP9.34□□□□□ -0.91
SS18-205ENST00000542420 EVA1AQ9H8M9 152 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 TRIM45Q9H8W5 580 aaPredicted RBP9.34□□□□□ -0.91
SS18-205ENST00000542420 HMG20AQ9NP66 347 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 PRDM7Q9NQW5 492 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 KLF15Q9UIH9 416 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 ENTPD4Q9Y227 616 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 OR1A2Q9Y585 309 aa9.34□□□□□ -0.91
SS18-205ENST00000542420 A0A1W2PRQ8 180 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 PRSS38A1L453 326 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 C10orf142B7Z368 130 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 ANHXE9PGG2 379 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 TNFSF14O43557 240 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 LCMT2O60294 686 aaKnown RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 OPN1SWP03999 348 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 BCHEP06276 602 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 FHP07954 510 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 OSMP13725 252 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 ZNF182P17025 639 aaPredicted RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 ATP5A1P25705 553 aaKnown RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 BCL6P41182 706 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 CRISP1P54107 249 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 C21orf59P57076 290 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 PRR5P85299 388 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 ADAM15Q13444 863 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 DGCR6Q14129 220 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 TMEM196Q5HYL7 178 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 C9orf50Q5SZB4 431 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 FAM109BQ6ICB4 259 aaPredicted RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 ZNF367Q7RTV3 350 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 PAQR7Q86WK9 346 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 CENPSQ8N2Z9 138 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 FAM46DQ8NEK8 389 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 SUN3Q8TAQ9 357 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 CHPT1Q8WUD6 406 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 RSC1A1Q92681 617 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 NECTIN4Q96NY8 510 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 KXD1Q9BQD3 176 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 PINK1Q9BXM7 581 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 GLIPR2Q9H4G4 154 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 SLC6A20Q9NP91 592 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 FZD3Q9NPG1 666 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 IMP3Q9NV31 184 aaKnown RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 GIN1Q9NXP7 522 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 SLC9A8Q9Y2E8 581 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 SNX8Q9Y5X2 465 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 SNRNP200O75643 2136 aaKnown RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 FEZF1A0PJY2 475 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 GSAPA4D1B5 854 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 URADA6NGE7 173 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 FAM47E-STBD1D6RA91 191 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 EMC8O43402 210 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 H1F0P07305 194 aaKnown RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 CSNK2A2P19784 350 aaPredicted RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 PSMB5P28074 263 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 CYP4F2P78329 520 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 AQP6Q13520 282 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 PUM1Q14671 1186 aaKnown RBP eCLIP9.33□□□□□ -0.92
SS18-205ENST00000542420 LAPTM4AQ15012 233 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 SHHQ15465 462 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 MAPK11Q15759 364 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 FAM209AQ5JX71 171 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 DCST1Q5T197 706 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 SLX4IPQ5VYV7 408 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 FRMPD2BQ6IN97 320 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 SLC48A1Q6P1K1 146 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 PARM1Q6UWI2 310 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 DNAJC5GQ8N7S2 189 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 TOR1AIP2Q8NFQ8 470 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 GPR32P1Q8NGA4 272 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 OR14C36Q8NHC7 312 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 SGCDQ92629 289 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 DNASE1L2Q92874 299 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 WDR92Q96MX6 357 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 BBS4Q96RK4 519 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 UCK2Q9BZX2 261 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 POLR2J2Q9GZM3 115 aaKnown RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 POLR2J3Q9H1A7 115 aaKnown RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 OSGEPL1Q9H4B0 414 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 NMNAT1Q9HAN9 279 aaPredicted RBP9.33□□□□□ -0.92
SS18-205ENST00000542420 C3orf14Q9HBI5 128 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 CLN6Q9NWW5 311 aa9.33□□□□□ -0.92
SS18-205ENST00000542420 IMPAD1Q9NX62 359 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms