RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 HLCSP50747 726 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 HK2P52789 917 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 TRA2BP62995 288 aaKnown RBP9.03□□□□□ -0.96
YBX3-212ENST00000542002 ERVK-8P63133 956 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 DUSP8Q13202 625 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 BIKQ13323 160 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 ZNF267Q14586 743 aaPredicted RBP9.03□□□□□ -0.96
YBX3-212ENST00000542002 NR6A1Q15406 480 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 EIF2S3LQ2VIR3 472 aaKnown RBP9.03□□□□□ -0.96
YBX3-212ENST00000542002 ZNF766Q5HY98 468 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 SPDYAQ5MJ70 313 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 OR52E8Q6IFG1 317 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 HSDL2Q6YN16 418 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 GALNT11Q8NCW6 608 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 FAR1Q8WVX9 515 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 RIT1Q92963 219 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 CNRIP1Q96F85 164 aaPredicted RBP9.03□□□□□ -0.96
YBX3-212ENST00000542002 SCMH1Q96GD3 660 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 EGLN2Q96KS0 407 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 C3orf30Q96M34 536 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 SSU72Q9NP77 194 aaKnown RBP9.03□□□□□ -0.96
YBX3-212ENST00000542002 KLHL1Q9NR64 748 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 SENP1Q9P0U3 644 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 LRFN1Q9P244 771 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 MAP10Q9P2G4 905 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 ERVK-19Q9WJR5 959 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 FIS1Q9Y3D6 152 aa9.03□□□□□ -0.96
YBX3-212ENST00000542002 C1orf226A1L170 272 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 CLEC18AA5D8T8 446 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 OR10H2O60403 315 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 NME6O75414 186 aaPredicted RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 CRCPO75575 148 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 ERAL1O75616 437 aaKnown RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 SP1P08047 785 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 ANXA4P09525 319 aaPredicted RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 CPMP14384 443 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 PORP16435 677 aaPredicted RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 PIK3R1P27986 724 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 TIA1P31483 386 aaKnown RBP eCLIP9.02□□□□□ -0.974e-8■■■■■ 30.5
YBX3-212ENST00000542002 GALNSP34059 522 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 ALDH9A1P49189 494 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 CYB561P49447 251 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 SLC37A1P57057 533 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 WDR4P57081 412 aaKnown RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 PLIN5Q00G26 463 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 OC90Q02509 493 aaPredicted RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 ACSM2AQ08AH3 577 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 ASPHQ12797 758 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 LTB4RQ15722 352 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 SPRED3Q2MJR0 410 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 RFTN2Q52LD8 501 aaPredicted RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 SPIN4Q56A73 249 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 PIGGQ5H8A4 983 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 RNFT1Q5M7Z0 435 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 ACSM2BQ68CK6 577 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 FAM71E1Q6IPT2 247 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 SLC25A25Q6KCM7 469 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 NOXRED1Q6NXP6 359 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 FAM111BQ6SJ93 734 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 LYPD8Q6UX82 237 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 CLEC18BQ6UXF7 455 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 NUDCD3Q8IVD9 361 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 CCDC116Q8IYX3 515 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 CLYBLQ8N0X4 340 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 ZNF615Q8N8J6 731 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 CLEC18CQ8NCF0 446 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 ADCY4Q8NFM4 1077 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 OR8K3Q8NH51 312 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 AGR3Q8TD06 166 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 FBXL20Q96IG2 436 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 RASL10BQ96S79 203 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 TRMOQ9BU70 441 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 CNPPD1Q9BV87 410 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 CLMPQ9H6B4 373 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 WDR41Q9HAD4 459 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 TMBIM4Q9HC24 238 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 KCNK9Q9NPC2 374 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 GIMAP2Q9UG22 337 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 ZNF639Q9UID6 485 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 MID2Q9UJV3 735 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 YARS2Q9Y2Z4 477 aaKnown RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 POLR3HQ9Y535 204 aaPredicted RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 ACTL7BQ9Y614 415 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 UBR5O95071 2799 aaPredicted RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 COL12A1Q99715 3063 aa9.02□□□□□ -0.97
YBX3-212ENST00000542002 PRRC2CQ9Y520 2896 aaKnown RBP9.02□□□□□ -0.97
YBX3-212ENST00000542002 GNG14A0A1W2PPG7 69 aa9.01□□□□□ -0.97
YBX3-212ENST00000542002 SYNDIG1LA6NDD5 238 aa9.01□□□□□ -0.97
YBX3-212ENST00000542002 NPIPB8E9PQR5 432 aa9.01□□□□□ -0.97
YBX3-212ENST00000542002 H3BQF6 201 aa9.01□□□□□ -0.97
YBX3-212ENST00000542002 PIP5K1BO14986 540 aa9.01□□□□□ -0.97
YBX3-212ENST00000542002 LSM1O15116 133 aaKnown RBP9.01□□□□□ -0.97
YBX3-212ENST00000542002 GUCY1B2O75343 617 aa9.01□□□□□ -0.97
YBX3-212ENST00000542002 VPS4BO75351 444 aa9.01□□□□□ -0.97
YBX3-212ENST00000542002 SEC22BO75396 215 aa9.01□□□□□ -0.97
YBX3-212ENST00000542002 ERLIN1O75477 346 aa9.01□□□□□ -0.97
YBX3-212ENST00000542002 SLC25A12O75746 678 aa9.01□□□□□ -0.97
YBX3-212ENST00000542002 RSL1D1O76021 490 aaKnown RBP9.01□□□□□ -0.97
YBX3-212ENST00000542002 RASAL1O95294 804 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms