RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ARMC8Q8IUR7 673 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 FAM83FQ8NEG4 500 aaPredicted RBP16.02■□□□□ 0.15
USP28-208ENST00000540438 OR52E1Q8NGJ3 308 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 OR4C15Q8NGM1 316 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 RHOXF1Q8NHV9 184 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 GPA33Q99795 319 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 DPEP2Q9H4A9 486 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 FGF22Q9HCT0 170 aa16.02■□□□□ 0.15
USP28-208ENST00000540438 CAPN5O15484 640 aaPredicted RBP16.01■□□□□ 0.15
USP28-208ENST00000540438 ADORA3P0DMS8 318 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 IL1RNP18510 177 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 SERPINB10P48595 397 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 OR2A1Q8NGT9 310 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 SLC7A13Q8TCU3 470 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 GEMIN6Q8WXD5 167 aaKnown RBP16.01■□□□□ 0.15
USP28-208ENST00000540438 STARD8Q92502 1023 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 COX4I2Q96KJ9 171 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 CAMK1GQ96NX5 476 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 PSORS1C1Q9UIG5 152 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 ENPP4Q9Y6X5 453 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 DOCK8Q8NF50 2099 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 FUOMA2VDF0 154 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 PSMD11O00231 422 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 JUNDP17535 347 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 FCARP24071 287 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 DLX2Q07687 328 aaPredicted RBP16.01■□□□□ 0.15
USP28-208ENST00000540438 FAM46CQ5VWP2 391 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 FBXO46Q6PJ61 603 aaPredicted RBP16.01■□□□□ 0.15
USP28-208ENST00000540438 PRSS48Q7RTY5 328 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 ALDH16A1Q8IZ83 802 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 SLC34A3Q8N130 599 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 ZFP41Q8N8Y5 198 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 ZNF557Q8N988 423 aaPredicted RBP16.01■□□□□ 0.15
USP28-208ENST00000540438 FBLIM1Q8WUP2 373 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 SMPDL3AQ92484 453 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 PDXPQ96GD0 296 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 HCN4Q9Y3Q4 1203 aa16.01■□□□□ 0.15
USP28-208ENST00000540438 CLCA1A8K7I4 914 aa16■□□□□ 0.15
USP28-208ENST00000540438 KRT75O95678 551 aa16■□□□□ 0.15
USP28-208ENST00000540438 HMGN2P05204 90 aaKnown RBP16■□□□□ 0.15
USP28-208ENST00000540438 UQCRC2P22695 453 aa16■□□□□ 0.15
USP28-208ENST00000540438 PPIBP23284 216 aaKnown RBP16■□□□□ 0.15
USP28-208ENST00000540438 LRRC32Q14392 662 aa16■□□□□ 0.15
USP28-208ENST00000540438 SYT6Q5T7P8 510 aaPredicted RBP16■□□□□ 0.15
USP28-208ENST00000540438 MENTQ9BUN1 341 aa16■□□□□ 0.15
USP28-208ENST00000540438 FAIMQ9NVQ4 179 aa16■□□□□ 0.15
USP28-208ENST00000540438 GPR34Q9UPC5 381 aa16■□□□□ 0.15
USP28-208ENST00000540438 A0A1W2PR48 441 aa16■□□□□ 0.15
USP28-208ENST00000540438 TLX2O43763 284 aaPredicted RBP16■□□□□ 0.15
USP28-208ENST00000540438 VEGFDO43915 354 aa16■□□□□ 0.15
USP28-208ENST00000540438 AVPR1BP47901 424 aa16■□□□□ 0.15
USP28-208ENST00000540438 HEPACAMQ14CZ8 416 aa16■□□□□ 0.15
USP28-208ENST00000540438 CAMKMTQ7Z624 323 aa16■□□□□ 0.15
USP28-208ENST00000540438 KLHDC8AQ8IYD2 350 aa16■□□□□ 0.15
USP28-208ENST00000540438 OR6T1Q8NGN1 323 aa16■□□□□ 0.15
USP28-208ENST00000540438 DYNC2LI1Q8TCX1 351 aa16■□□□□ 0.15
USP28-208ENST00000540438 COX14Q96I36 57 aa16■□□□□ 0.15
USP28-208ENST00000540438 ITPAQ9BY32 194 aa16■□□□□ 0.15
USP28-208ENST00000540438 STARD5Q9NSY2 213 aa16■□□□□ 0.15
USP28-208ENST00000540438 WBP1LQ9NX94 342 aa16■□□□□ 0.15
USP28-208ENST00000540438 CNIH4Q9P003 139 aa16■□□□□ 0.15
USP28-208ENST00000540438 CORO2BQ9UQ03 480 aa16■□□□□ 0.15
USP28-208ENST00000540438 ERGIC3Q9Y282 383 aa16■□□□□ 0.15
USP28-208ENST00000540438 NAALAD2Q9Y3Q0 740 aa16■□□□□ 0.15
USP28-208ENST00000540438 C2orf16Q68DN1 1984 aa16■□□□□ 0.15
USP28-208ENST00000540438 SERTM1A2A2V5 107 aa16■□□□□ 0.15
USP28-208ENST00000540438 DPTQ07507 201 aa16■□□□□ 0.15
USP28-208ENST00000540438 FCHO2Q0JRZ9 810 aa16■□□□□ 0.15
USP28-208ENST00000540438 IL18R1Q13478 541 aa16■□□□□ 0.15
USP28-208ENST00000540438 SHHQ15465 462 aa16■□□□□ 0.15
USP28-208ENST00000540438 C6orf132Q5T0Z8 1188 aa16■□□□□ 0.15
USP28-208ENST00000540438 CCNJQ5T5M9 372 aa16■□□□□ 0.15
USP28-208ENST00000540438 LCTLQ6UWM7 567 aa16■□□□□ 0.15
USP28-208ENST00000540438 IQCHQ86VS3 1027 aa16■□□□□ 0.15
USP28-208ENST00000540438 OR9A2Q8NGT5 310 aa16■□□□□ 0.15
USP28-208ENST00000540438 SP7Q8TDD2 431 aaPredicted RBP16■□□□□ 0.15
USP28-208ENST00000540438 DACH2Q96NX9 599 aa16■□□□□ 0.15
USP28-208ENST00000540438 EGLN3Q9H6Z9 239 aa16■□□□□ 0.15
USP28-208ENST00000540438 MRPS30Q9NP92 439 aaKnown RBP16■□□□□ 0.15
USP28-208ENST00000540438 ZNF229Q9UJW7 825 aa16■□□□□ 0.15
USP28-208ENST00000540438 MKLN1Q9UL63 735 aa16■□□□□ 0.15
USP28-208ENST00000540438 GPR55Q9Y2T6 319 aaPredicted RBP16■□□□□ 0.15
USP28-208ENST00000540438 CPSF4LA6NMK7 179 aaKnown RBP15.99■□□□□ 0.15
USP28-208ENST00000540438 ZW10O43264 779 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 PVRP15151 417 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 AZGP1P25311 298 aaKnown RBP15.99■□□□□ 0.15
USP28-208ENST00000540438 MC3RP41968 323 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 PIK3CBP42338 1070 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 BTN3A2P78410 334 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 ALDH6A1Q02252 535 aaKnown RBP15.99■□□□□ 0.15
USP28-208ENST00000540438 ZNF630Q2M218 657 aaPredicted RBP15.99■□□□□ 0.15
USP28-208ENST00000540438 OR4C11Q6IEV9 310 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 FRMPD2BQ6IN97 320 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 ENPP7Q6UWV6 458 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 ZNF554Q86TJ5 538 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 RELTQ969Z4 430 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 CNRIP1Q96F85 164 aaPredicted RBP15.99■□□□□ 0.15
USP28-208ENST00000540438 MAGEB10Q96LZ2 347 aaPredicted RBP15.99■□□□□ 0.15
USP28-208ENST00000540438 CNPPD1Q9BV87 410 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 SLC6A20Q9NP91 592 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms