RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 OR4K14Q8NGD5 310 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 NUBPLQ8TB37 319 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 AENQ8WTP8 325 aaKnown RBP13.7□□□□□ -0.22
USP28-204ENST00000537642 CHTF18Q8WVB6 975 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 RIT1Q92963 219 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 RELTQ969Z4 430 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 TM4SF18Q96CE8 201 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 CCDC126Q96EE4 140 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 KCNA7Q96RP8 456 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 ACPTQ9BZG2 426 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 TIMMDC1Q9NPL8 285 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 DEPPQ9NTK1 212 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 NMRK1Q9NWW6 199 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 CES1P1Q9UKY3 287 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 TIMM22Q9Y584 194 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 PCDHA9Q9Y5H5 950 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 A0A1B0GUH1 482 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 TLDC2A0PJX2 215 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 KLRC4-KLRK1H3BQV0 150 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 COPEO14579 308 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 ASNA1O43681 348 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 ULK1O75385 1050 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 SLU7O95391 586 aaKnown RBP13.69□□□□□ -0.22
USP28-204ENST00000537642 NADKO95544 446 aaPredicted RBP13.69□□□□□ -0.22
USP28-204ENST00000537642 CLDN1O95832 211 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 NUDT17P0C025 328 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 ZNF24P17028 368 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 RFC3P40938 356 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 XKP51811 444 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 NAGLUP54802 743 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 FOXA1P55317 472 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 SLC37A1P57057 533 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 DNAJB13P59910 316 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 GPR85P60893 370 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 ASPHQ12797 758 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 ZNF750Q32MQ0 723 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 PIGGQ5H8A4 983 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 RNF111Q6ZNA4 994 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 CXorf21Q9HAI6 301 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 MID1IP1Q9NPA3 183 aa13.69□□□□□ -0.22
USP28-204ENST00000537642 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.69□□□□□ -0.22
USP28-204ENST00000537642 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.69□□□□□ -0.22
USP28-204ENST00000537642 V9GYY5 206 aaPredicted RBP13.69□□□□□ -0.22
USP28-204ENST00000537642 PCNX1Q96RV3 2341 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 TRGV8A0A0C4DH27 118 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 A0A0G2JMM0 328 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 A0A1W2PPB8 328 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 A0A1W2PRS3 328 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 C1orf226A1L170 272 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 PINLYPA6NC86 204 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 KIR3DP1A8MWS1 328 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 SLC19A2O60779 497 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 GUCY1B2O75343 617 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 CT62P0C5K7 136 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 CPMP14384 443 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 CPA3P15088 417 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 SSTR4P31391 388 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 CA7P43166 264 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 PER3P56645 1201 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 RAE1P78406 368 aaKnown RBP13.68□□□□□ -0.22
USP28-204ENST00000537642 HMGCS1Q01581 520 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 RBPJQ06330 500 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 SLC48A1Q6P1K1 146 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 WDR93Q6P2C0 686 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 OPN5Q6U736 354 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 SCIMPQ6UWF3 145 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 LYPD8Q6UX82 237 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 RTL4Q6ZR62 310 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 FRMD7Q6ZUT3 714 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 CHERPQ8IWX8 916 aaKnown RBP13.68□□□□□ -0.22
USP28-204ENST00000537642 GBP7Q8N8V2 638 aaPredicted RBP13.68□□□□□ -0.22
USP28-204ENST00000537642 ZFP62Q8NB50 900 aaPredicted RBP13.68□□□□□ -0.22
USP28-204ENST00000537642 C16orf52Q8NHV5 167 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 RDH11Q8TC12 318 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 APIPQ96GX9 242 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 OXSMQ9NWU1 459 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 MCM8Q9UJA3 840 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 ZNF835Q9Y2P0 537 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 ZNF407Q9C0G0 2248 aa13.68□□□□□ -0.22
USP28-204ENST00000537642 SERTM1A2A2V5 107 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 OR6C76A6NM76 312 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 ZNHIT1O43257 154 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 ZG16O60844 167 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 PORP16435 677 aaPredicted RBP13.67□□□□□ -0.22
USP28-204ENST00000537642 PTGER1P34995 402 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 NAA20P61599 178 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 TRA2BP62995 288 aaKnown RBP13.67□□□□□ -0.22
USP28-204ENST00000537642 HSF1Q00613 529 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 FUT7Q11130 342 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 EBPQ15125 230 aaKnown RBP13.67□□□□□ -0.22
USP28-204ENST00000537642 C3AR1Q16581 482 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.67□□□□□ -0.22
USP28-204ENST00000537642 EMBQ6PCB8 327 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 Q6ZPB1 254 aaPredicted RBP13.67□□□□□ -0.22
USP28-204ENST00000537642 SLC29A4Q7RTT9 530 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 MAMDC2Q7Z304 686 aaPredicted RBP13.67□□□□□ -0.22
USP28-204ENST00000537642 TRABD2AQ86V40 505 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 SPPL2CQ8IUH8 684 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 GALNT12Q8IXK2 581 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 GHDCQ8N2G8 530 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms