RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PRAMEF20Q5VT98 475 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 LIPJQ5W064 366 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 MRM1Q6IN84 353 aaKnown RBP10.45□□□□□ -0.74
VPS28-214ENST00000531032 CCDC91Q7Z6B0 441 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 TMEM200AQ86VY9 491 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 CENPLQ8N0S6 344 aaPredicted RBP10.45□□□□□ -0.74
VPS28-214ENST00000531032 TEX9Q8N6V9 391 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 PPM1NQ8N819 430 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 MYRIPQ8NFW9 859 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 OR10G3Q8NGC4 313 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 RHEBL1Q8TAI7 183 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 ZNF592Q92610 1267 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 NXNL1Q96CM4 212 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 MTERF1Q99551 399 aaKnown RBP10.45□□□□□ -0.74
VPS28-214ENST00000531032 CNPPD1Q9BV87 410 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 ERVK-6Q9BXR3 956 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 WWTR1Q9GZV5 400 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 PRM3Q9NNZ6 103 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 ACKR4Q9NPB9 350 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 QPCTLQ9NXS2 382 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 CNIH4Q9P003 139 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 ERVK-19Q9WJR5 959 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 PCDHGA11Q9Y5H2 935 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 IQANK1A0A1B0GTG1 560 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 OR6C76A6NM76 312 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 SYCE1LA8MT33 242 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 H0YIV9 168 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 TMPRSS11DO60235 418 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 UGDHO60701 494 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 EEDO75530 441 aaKnown RBP10.44□□□□□ -0.74
VPS28-214ENST00000531032 GPR75O95800 540 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 CLPSP04118 112 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 NR2F6P10588 404 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 PTX3P26022 381 aaPredicted RBP10.44□□□□□ -0.74
VPS28-214ENST00000531032 SERPINB3P29508 390 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 DNAJA1P31689 397 aaKnown RBP10.44□□□□□ -0.74
VPS28-214ENST00000531032 GALNSP34059 522 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 BSGP35613 385 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 RPS13P62277 151 aaKnown RBP10.44□□□□□ -0.74
VPS28-214ENST00000531032 CUL3Q13618 768 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 NTRK2Q16620 822 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 RIPPLY2Q5TAB7 128 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 RNF111Q6ZNA4 994 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 SLC29A4Q7RTT9 530 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 MYLK4Q86YV6 388 aaPredicted RBP10.44□□□□□ -0.74
VPS28-214ENST00000531032 ZNF441Q8N8Z8 693 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 NEIL3Q8TAT5 605 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 FBXO25Q8TCJ0 367 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 FBF1Q8TES7 1133 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 KCTD4Q8WVF5 259 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 REPS1Q96D71 796 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 GAL3ST4Q96RP7 486 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 EXO5Q9H790 373 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 DDX31Q9H8H2 851 aaKnown RBP10.44□□□□□ -0.74
VPS28-214ENST00000531032 LYARQ9NX58 379 aaKnown RBP10.44□□□□□ -0.74
VPS28-214ENST00000531032 PSD3Q9NYI0 1048 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 CNOT11Q9UKZ1 510 aaKnown RBP10.44□□□□□ -0.74
VPS28-214ENST00000531032 ACOT9Q9Y305 439 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 ASB4Q9Y574 426 aa10.44□□□□□ -0.74
VPS28-214ENST00000531032 ANKHD1Q8IWZ3 2542 aaKnown RBP10.44□□□□□ -0.74
VPS28-214ENST00000531032 A0A087X1B8 175 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 A0A1W2PR48 441 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 ANKRD33BA6NCL7 494 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 WASHC1A8K0Z3 465 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 OR10H2O60403 315 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 TRIM3O75382 744 aaPredicted RBP10.43□□□□□ -0.74
VPS28-214ENST00000531032 CTAG2O75638 210 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 ZWINTO95229 277 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 FAM58BPP0C7Q3 252 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 MAGEA4P43358 317 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 ART1P52961 327 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 ALDH18A1P54886 795 aaKnown RBP10.43□□□□□ -0.74
VPS28-214ENST00000531032 PHEXP78562 749 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 IRF9Q00978 393 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 GUCY2DQ02846 1103 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 ZNF267Q14586 743 aaPredicted RBP10.43□□□□□ -0.74
VPS28-214ENST00000531032 PCBP2Q15366 365 aaKnown RBP eCLIP10.43□□□□□ -0.74
VPS28-214ENST00000531032 PFKFB4Q16877 469 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 WHAMMP3Q1A5X7 153 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 FAM83EQ2M2I3 478 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 TBCELQ5QJ74 424 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 METTL2BQ6P1Q9 378 aaKnown RBP10.43□□□□□ -0.74
VPS28-214ENST00000531032 ARSKQ6UWY0 536 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 ZDHHC24Q6UX98 284 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 SEM1Q6ZVN7 128 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 ULK2Q8IYT8 1036 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 L3MBTL4Q8NA19 623 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 FAM13CQ8NE31 585 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 WDR20Q8TBZ3 569 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 DOK4Q8TEW6 326 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 NRGNQ92686 78 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 RIT1Q92963 219 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 DOHHQ9BU89 302 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 SLC6A15Q9H2J7 730 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 ACTR8Q9H981 624 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 ALKBH4Q9NXW9 302 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 B4GALT7Q9UBV7 327 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 ANGPTL3Q9Y5C1 460 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 ITPR3Q14573 2671 aa10.43□□□□□ -0.74
VPS28-214ENST00000531032 NINQ8N4C6 2090 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms