RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 PAPD4Q6PIY7 484 aaKnown RBP12.83□□□□□ -0.36
CD44-224ENST00000526669 FAM111BQ6SJ93 734 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 KIRREL2Q6UWL6 708 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 LRRC69Q6ZNQ3 347 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 ZNF551Q7Z340 670 aaPredicted RBP12.83□□□□□ -0.36
CD44-224ENST00000526669 MRGPREQ86SM8 312 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 MTDHQ86UE4 582 aaKnown RBP12.83□□□□□ -0.36
CD44-224ENST00000526669 ANKRD46Q86W74 232 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 FUNDC1Q8IVP5 155 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 LRRC25Q8N386 305 aaPredicted RBP12.83□□□□□ -0.36
CD44-224ENST00000526669 CCDC197Q8NCU1 140 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 SUN3Q8TAQ9 357 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 ADAMTS17Q8TE56 1095 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 KAT2AQ92830 837 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 ZNF681Q96N22 645 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 PRPF18Q99633 342 aaKnown RBP12.83□□□□□ -0.36
CD44-224ENST00000526669 GLIPR2Q9H4G4 154 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 ADAP2Q9NPF8 381 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 MAPRE3Q9UPY8 281 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 NINQ8N4C6 2090 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 FAM234BA2RU67 622 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 ZNF891A8MT65 544 aaPredicted RBP12.82□□□□□ -0.36
CD44-224ENST00000526669 MYO1GB0I1T2 1018 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 C17orf105B2RV13 164 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 CPSF4O95639 269 aaKnown RBP12.82□□□□□ -0.36
CD44-224ENST00000526669 C6orf47O95873 294 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 CELA2AP08217 269 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 KIR3DL1P43629 444 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 MRPL19P49406 292 aaKnown RBP12.82□□□□□ -0.36
CD44-224ENST00000526669 WNT3P56703 355 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 CDC20Q12834 499 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 HSPB3Q12988 150 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 KLF10Q13118 480 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 ZNF267Q14586 743 aaPredicted RBP12.82□□□□□ -0.36
CD44-224ENST00000526669 METTL21CQ5VZV1 264 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 PROSER1Q86XN7 944 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 ST13P4Q8IZP2 240 aaPredicted RBP12.82□□□□□ -0.36
CD44-224ENST00000526669 CLECL1Q8IZS7 167 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 CPSF7Q8N684 471 aaKnown RBP12.82□□□□□ -0.36
CD44-224ENST00000526669 OR11G2Q8NGC1 345 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 OR9A2Q8NGT5 310 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 VPS33AQ96AX1 596 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 TESCQ96BS2 214 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 COQ8BQ96D53 544 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 MAGED4Q96JG8 741 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 WDR77Q9BQA1 342 aaPredicted RBP12.82□□□□□ -0.36
CD44-224ENST00000526669 CNPPD1Q9BV87 410 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 BHLHE41Q9C0J9 482 aaPredicted RBP12.82□□□□□ -0.36
CD44-224ENST00000526669 ANKRA2Q9H9E1 313 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 CPNE5Q9HCH3 593 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 ATAD3AQ9NVI7 634 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 P4HTMQ9NXG6 502 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 FBXL4Q9UKA2 621 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 CAPN7Q9Y6W3 813 aa12.82□□□□□ -0.36
CD44-224ENST00000526669 LOC102723996A0A087X1L8 192 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 IGHV1-45A0A0A0MS14 117 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 SAGE2PA6NJ88 616 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 HRKO00198 91 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 CFLARO15519 480 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 ABCB1P08183 1280 aaPredicted RBP12.81□□□□□ -0.36
CD44-224ENST00000526669 CYC1P08574 325 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 SLC35E2P0CK97 266 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 CAPN3P20807 821 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 GPC1P35052 558 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 CDK9P50750 372 aaKnown RBP12.81□□□□□ -0.36
CD44-224ENST00000526669 MANFP55145 182 aaKnown RBP12.81□□□□□ -0.36
CD44-224ENST00000526669 KCNK10P57789 538 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 MRPS35P82673 323 aaKnown RBP12.81□□□□□ -0.36
CD44-224ENST00000526669 TLE3Q04726 772 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 SRSF11Q05519 484 aaKnown RBP12.81□□□□□ -0.36
CD44-224ENST00000526669 CHAF1BQ13112 559 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 ELAVL1Q15717 326 aaKnown RBP12.81□□□□□ -0.36
CD44-224ENST00000526669 C6orf163Q5TEZ5 329 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 BROXQ5VW32 411 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 CCDC81Q6ZN84 652 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 CAMKMTQ7Z624 323 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 ZNF321PQ8N8H1 164 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 GLB1L3Q8NCI6 653 aaPredicted RBP12.81□□□□□ -0.36
CD44-224ENST00000526669 PTPMT1Q8WUK0 201 aaPredicted RBP12.81□□□□□ -0.36
CD44-224ENST00000526669 SPDL1Q96EA4 605 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 RBM18Q96H35 190 aaKnown RBP12.81□□□□□ -0.36
CD44-224ENST00000526669 ZNF764Q96H86 408 aaPredicted RBP12.81□□□□□ -0.36
CD44-224ENST00000526669 AMDHD1Q96NU7 426 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 OR52E6Q96RD3 313 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 FAM117AQ9C073 453 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 ZNF160Q9HCG1 818 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 TAS2R7Q9NYW3 318 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 ERVK-19Q9WJR5 959 aa12.81□□□□□ -0.36
CD44-224ENST00000526669 CACNA1GO43497 2377 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 NSG1A0A0A6YYJ2 146 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 A0A1W2PRB8 838 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 ARGFXA6NJG6 315 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 PEX12O00623 359 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 CCDC22O60826 627 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 PGRP06401 933 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 PCSK2P16519 638 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 DDX5P17844 614 aaKnown RBP12.8□□□□□ -0.36
CD44-224ENST00000526669 MPIP34949 423 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 SOAT1P35610 550 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 FRKP42685 505 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms