RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 TAF7Q15545 349 aaPredicted RBP3.66□□□□□ -1.82
CD44-223ENST00000526553 STX1AQ16623 288 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 HSP90AA5PQ58FG0 334 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 TEX35Q5T0J7 233 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 SEL1L3Q68CR1 1132 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 SLC27A4Q6P1M0 643 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 OLFM4Q6UX06 510 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 TDHQ8IZJ6 230 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 FGFRL1Q8N441 504 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 CSNK1G2-AS1Q8NCQ2 148 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 TMEM185AQ8NFB2 350 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 CCDC110Q8TBZ0 833 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 CD99L2Q8TCZ2 262 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 SAP25Q8TEE9 199 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 GANCQ8TET4 914 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 SEPT8Q92599 483 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 STRADBQ9C0K7 418 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 MARCH7Q9H992 704 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 HOMER3Q9NSC5 361 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 ACOXLQ9NUZ1 547 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 TMOD3Q9NYL9 352 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 GPR83Q9NYM4 423 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 SPASTQ9UBP0 616 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 PLEKHA6Q9Y2H5 1048 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 SH3GLB1Q9Y371 365 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 MRPS2Q9Y399 296 aaKnown RBP3.66□□□□□ -1.82
CD44-223ENST00000526553 TMED7Q9Y3B3 224 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 UMODL1Q5DID0 1318 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 ADAMTS9Q9P2N4 1935 aa3.66□□□□□ -1.82
CD44-223ENST00000526553 MACROD2A1Z1Q3 448 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 A8MU76 341 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 ZNF732B4DXR9 585 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 CHEK1O14757 476 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 ZNF749O43361 778 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 SYT7O43581 403 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 OR6A2O95222 327 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 KIF5BP33176 963 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 SLC1A3P43003 542 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 RIDAP52758 137 aaKnown RBP3.65□□□□□ -1.83
CD44-223ENST00000526553 KCNK10P57789 538 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 CNTN1Q12860 1018 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 DPYSQ14117 519 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 GIT2Q14161 759 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 GK2Q14410 553 aaPredicted RBP3.65□□□□□ -1.83
CD44-223ENST00000526553 KNOP1Q1ED39 458 aaKnown RBP3.65□□□□□ -1.83
CD44-223ENST00000526553 HERC4Q5GLZ8 1057 aaPredicted RBP3.65□□□□□ -1.83
CD44-223ENST00000526553 ZNF776Q68DI1 518 aaPredicted RBP3.65□□□□□ -1.83
CD44-223ENST00000526553 C1orf186Q6ZWK4 172 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 TMUB2Q71RG4 321 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 ADAMTSL2Q86TH1 951 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 KCNMB4Q86W47 210 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 STHQ8IWL8 128 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 FBXL16Q8N461 479 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 SMYD1Q8NB12 490 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 SUMF1Q8NBK3 374 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 SPATA18Q8TC71 538 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 SPATA13Q96N96 652 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 TAAR6Q96RI8 345 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 UBAC1Q9BSL1 405 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 CCM2Q9BSQ5 444 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 PINK1Q9BXM7 581 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 EXOC7Q9UPT5 735 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 CLCA3PQ9Y6N3 262 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 FER1L5A0AVI2 2057 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 UBE4BO95155 1302 aa3.65□□□□□ -1.83
CD44-223ENST00000526553 CCDC162PA2VCL2 907 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 CHUKO15111 745 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 NME2P1O60361 137 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 OR6B1O95007 311 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 GUCA1CO95843 209 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 CT45A8P0DMV1 189 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 CT45A9P0DMV2 189 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 GHRP10912 638 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 SKILP12757 684 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 FCARP24071 287 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 MARCKSP29966 332 aaPredicted RBP3.64□□□□□ -1.83
CD44-223ENST00000526553 ALDH3B1P43353 468 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 EIPR1Q53HC9 387 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 CT45A2Q5DJT8 189 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 C9orf66Q5T8R8 295 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 PLPP4Q5VZY2 271 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 ABRAXAS1Q6UWZ7 409 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 Q71RC1 249 aaPredicted RBP3.64□□□□□ -1.83
CD44-223ENST00000526553 CEACAM19Q7Z692 300 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 OR4A16Q8NH70 328 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 NABP1Q96AH0 204 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 SAMD8Q96LT4 415 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 TSGA13Q96PP4 275 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 RBM24Q9BX46 236 aaKnown RBP3.64□□□□□ -1.83
CD44-223ENST00000526553 FTHL17Q9BXU8 183 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 GANQ9H2C0 597 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 KCNK13Q9HB14 408 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 TMCC3Q9ULS5 477 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 AURKCQ9UQB9 309 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 AUP1Q9Y679 476 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 GON4LQ3T8J9 2241 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 WDR62O43379 1518 aa3.64□□□□□ -1.83
CD44-223ENST00000526553 CEP164Q9UPV0 1460 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 TRGV8A0A0C4DH27 118 aa3.63□□□□□ -1.83
CD44-223ENST00000526553 IGHV3-16A0A0C4DH30 117 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms