RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 FUNDC1Q8IVP5 155 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 Q8N402 240 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 RGS17Q9UGC6 210 aaPredicted RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 RP1P56715 2156 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 FUOMA2VDF0 154 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 E2F3O00716 465 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 SCDO00767 359 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 C21orf33P30042 268 aaPredicted RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 EIF1AXP47813 144 aaKnown RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 ZNF791Q3KP31 576 aaPredicted RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 MLIPQ5VWP3 458 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 GRHL2Q6ISB3 625 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 TIGD4Q8IY51 512 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 DEFB119Q8N690 84 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 TMEM102Q8N9M5 508 aaPredicted RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 PXYLP1Q8TE99 480 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 PRRG4Q9BZD6 226 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 SEC61A2Q9H9S3 476 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 IFT46Q9NQC8 304 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 CROCCQ5TZA2 2017 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 MROH6A6NGR9 719 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 I3L521 148 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 FLRT2O43155 660 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 EMC8O43402 210 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 COQ9O75208 318 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 ZNF26P17031 533 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 ATF6P18850 670 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 SLC6A6P31641 620 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 SHMT2P34897 504 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 SELENOWP63302 87 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 GSTM4Q03013 218 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 ARFRP1Q13795 201 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 Q6ZSR9 355 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 NCCRP1Q6ZVX7 275 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 CYP4V2Q6ZWL3 525 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 CBARPQ8N350 705 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 FANK1Q8TC84 345 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 OR2M4Q96R27 311 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 ZNF300Q96RE9 604 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 INTS6Q9UL03 887 aaKnown RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 HSPE1-MOB4S4R3N1 261 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 PCP4L1A6NKN8 68 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 HEPACAM2A8MVW5 462 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 TNFP01375 233 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 PEPDP12955 493 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 PUDPQ08623 228 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 ITPRIPL2Q3MIP1 535 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 NDUFAF5Q5TEU4 345 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 RFLNAQ6ZTI6 216 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 CEACAM19Q7Z692 300 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 IGFN1Q86VF2 1251 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 KLHDC8AQ8IYD2 350 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 TCEAL8Q8IYN2 117 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 CHDHQ8NE62 594 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 OR2L5Q8NG80 312 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 SETD7Q8WTS6 366 aaKnown RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 HSPA12BQ96MM6 686 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 MACROD1Q9BQ69 325 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 CLSTN3Q9BQT9 956 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 KLF16Q9BXK1 252 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 NMNAT1Q9HAN9 279 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 RC3H2Q9HBD1 1191 aaKnown RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 IL21RQ9HBE5 538 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 FAIMQ9NVQ4 179 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 TAS2R10Q9NYW0 307 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 CXXC1Q9P0U4 656 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 FAM186AA6NE01 2351 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 TPRP12270 2363 aaKnown RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 A0A1B0GUL6 1792 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 FXYD6-FXYD2A0A087WZ82 144 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 KLHL33A6NCF5 533 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 EIF3FO00303 357 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 ACOT8O14734 319 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 KLKB1P03952 638 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 IL1RNP18510 177 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 POU6F2P78424 691 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 SCGB2B2Q4G0G5 96 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 ZNF782Q6ZMW2 699 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 Q6ZPB1 254 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 PAPD5Q8NDF8 572 aaKnown RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 SLC22A12Q96S37 553 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 TMEM246Q9BRR3 403 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 NTMT1Q9BV86 223 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 FXYD6Q9H0Q3 95 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 ABCG5Q9H222 651 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 OR51E2Q9H255 320 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 TP63Q9H3D4 680 aaPredicted RBP12.09□□□□□ -0.47
USP53-209ENST00000514665 ABCG2Q9UNQ0 655 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 LIPT1Q9Y234 373 aa12.09□□□□□ -0.47
USP53-209ENST00000514665 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.08□□□□□ -0.48
USP53-209ENST00000514665 GABRR3A8MPY1 467 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 GPR37L1O60883 481 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 KDM4BO94953 1096 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 NUDT7P0C024 238 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 PDHA2P29803 388 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 MLLT3P42568 568 aaPredicted RBP12.08□□□□□ -0.48
USP53-209ENST00000514665 MAP2K3P46734 347 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 MTNR1AP48039 350 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 ZNF234Q14588 700 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 TCEAL5Q5H9L2 206 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms