RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 RUNX3Q13761 415 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 ABRAXAS2Q15018 415 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 TATDN3Q17R31 274 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 CLEC12AQ5QGZ9 265 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 SAMD14Q8IZD0 417 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-213ENST00000514442 CAMKVQ8NCB2 501 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 OR8K3Q8NH51 312 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 RHEBL1Q8TAI7 183 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 PIGKQ92643 395 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 OR51V1Q9H2C8 321 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 GMEB2Q9UKD1 530 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 TRBC2A0A5B9 178 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 XKRYO14609 159 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 B4GALT2O60909 372 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 CAMK1Q14012 370 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 CYP27C1Q4G0S4 372 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 ZNF542PQ5EBM4 170 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 RNF130Q86XS8 419 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 PELI3Q8N2H9 469 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 SLC7A6Q92536 515 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 SAMD11Q96NU1 681 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 GSTO2Q9H4Y5 243 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 LATO43561 262 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 LHCGRP22888 699 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 MAGEA3P43357 314 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 CDK6Q00534 326 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 CAMK2BQ13554 666 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 LRRC26Q2I0M4 334 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 PKDCCQ504Y2 493 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 RAB41Q5JT25 222 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 ZNF534Q76KX8 674 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 RETREG3Q86VR2 466 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 TCEAL4Q96EI5 215 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 MGME1Q9BQP7 344 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 POLR2J3Q9H1A7 115 aaKnown RBP12.56□□□□□ -0.4
TCOF1-213ENST00000514442 RETREG1Q9H6L5 497 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 CSNK1G1Q9HCP0 422 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 P2RX2Q9UBL9 471 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 ZNF69Q9UC07 566 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 PCDHA9Q9Y5H5 950 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 STRCQ7RTU9 1775 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 A0A1W2PQL4 384 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-213ENST00000514442 CTDSP2O14595 271 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 CAPN5O15484 640 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-213ENST00000514442 PROM1O43490 865 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 RNGTTO60942 597 aaKnown RBP12.56□□□□□ -0.4
TCOF1-213ENST00000514442 ZNF780AO75290 641 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-213ENST00000514442 PROS1P07225 676 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 PTNP21246 168 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 C1orf61Q13536 156 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 COL28A1Q2UY09 1125 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 ADNP2Q6IQ32 1131 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 RBCK1Q9BYM8 510 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 FANCFQ9NPI8 374 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 ZSCAN32Q9NX65 697 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 KLHL21Q9UJP4 597 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 SARDHQ9UL12 918 aa12.56□□□□□ -0.4
TCOF1-213ENST00000514442 USP54Q70EL1 1684 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 TMEM189-UBE2V1I3L0A0 370 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 CKMT1AP12532 417 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 CEBPBP17676 345 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 POLR2IP36954 125 aaKnown RBP12.55□□□□□ -0.4
TCOF1-213ENST00000514442 SPINT3P49223 89 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 XKP51811 444 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 TBCEQ15813 527 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-213ENST00000514442 LIPKQ5VXJ0 399 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 KDELC1Q6UW63 502 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 METTL27Q8N6F8 245 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-213ENST00000514442 LSMEM1Q8N8F7 131 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 OR10H5Q8NGA6 315 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 TNFAIP8L1Q8WVP5 186 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 IFT27Q9BW83 186 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 CDADC1Q9BWV3 514 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 PGAP2Q9UHJ9 254 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 OR1A2Q9Y585 309 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 NPIPB15A6NHN6 443 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-213ENST00000514442 ENTPD6O75354 484 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 RPS21P63220 83 aaKnown RBP12.55□□□□□ -0.4
TCOF1-213ENST00000514442 SLC30A6Q6NXT4 461 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 MOSPD2Q8NHP6 518 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 DYNC2LI1Q8TCX1 351 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 MYLIPQ8WY64 445 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 RAB8BQ92930 207 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 ZNF304Q9HCX3 659 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 FXYD6-FXYD2A0A087WZ82 144 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 NUPL2O15504 423 aaKnown RBP12.55□□□□□ -0.4
TCOF1-213ENST00000514442 TBPL1P62380 186 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 NOXRED1Q6NXP6 359 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 HSDL2Q6YN16 418 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 PJA1Q8NG27 643 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 RNF31Q96EP0 1072 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 LRIG1Q96JA1 1093 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 COQ10AQ96MF6 247 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 FAM129BQ96TA1 746 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 FXYD6Q9H0Q3 95 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 GPR39O43194 453 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 HLA-DPB1P04440 258 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 ARSAP15289 507 aa12.55□□□□□ -0.4
TCOF1-213ENST00000514442 EIF4HQ15056 248 aaKnown RBP12.55□□□□□ -0.4
TCOF1-213ENST00000514442 GDPGP1Q6ZNW5 385 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms