RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PRSS16Q9NQE7 514 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 TEX10Q9NXF1 929 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 KLHL3Q9UH77 587 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 TAF4O00268 1085 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 DNAJB5O75953 348 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 RECKO95980 971 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 SSX1Q16384 188 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 TANGO2Q6ICL3 276 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 TRIM40Q6P9F5 258 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 VASH1Q7L8A9 365 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 JPH3Q8WXH2 748 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 PPP1R16AQ96I34 528 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 ZNF717Q9BY31 904 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 MOSPD1Q9UJG1 213 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 N6AMT1Q9Y5N5 214 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 HAT1O14929 419 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 ADAMDEC1O15204 470 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 LCMT2O60294 686 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 B4GALT2O60909 372 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 NFATC1O95644 943 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 PAK4O96013 591 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 ACP5P13686 325 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 MANFP55145 182 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 SLAMF1Q13291 335 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 OR4C15Q8NGM1 316 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 PITX2Q99697 317 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 ASPNQ9BXN1 380 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 DPEP2Q9H4A9 486 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 PRKAG2Q9UGJ0 569 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 SCN2AQ99250 2005 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 ALPK3Q96L96 1907 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 EFCAB10A6NFE3 127 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 DYRK3O43781 588 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 GUCY1B2O75343 617 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 APOA1P02647 267 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 CA3P07451 260 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 HOXB6P17509 224 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 CHMP24386 653 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 PTX3P26022 381 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 SLC15A1P46059 708 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 DSTNP60981 165 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 CDK3Q00526 305 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 DPTQ07507 201 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 FCHO2Q0JRZ9 810 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 ATAD3CQ5T2N8 411 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 ARMC4Q5T2S8 1044 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 PNCKQ6P2M8 343 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 OXR1Q8N573 874 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 CTRCQ99895 268 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 SPATA9Q9BWV2 254 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 BARHL1Q9BZE3 327 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 NMNAT1Q9HAN9 279 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 ACER3Q9NUN7 267 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 KCNK6Q9Y257 313 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 GON4LQ3T8J9 2241 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 SLC35F4A4IF30 521 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 OR1F1O43749 312 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 TMPRSS11DO60235 418 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 OR10H3O60404 316 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 KRT75O95678 551 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 KELP23276 732 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 DRD3P35462 400 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 MAPK9P45984 424 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 RAB25P57735 213 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 CD83Q01151 205 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 FADDQ13158 208 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 PUM1Q14671 1186 aaKnown RBP eCLIP15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 TBCEQ15813 527 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 MICAQ29983 383 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 PIP5KL1Q5T9C9 394 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 DCUN1D3Q8IWE4 304 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 LINC01555Q8NAE3 123 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 SYT14Q8NB59 555 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 KBTBD8Q8NFY9 601 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 POP5Q969H6 163 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 LINC00615Q96LM1 132 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 COL21A1Q96P44 957 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 FYTTD1Q96QD9 318 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 SIGLEC11Q96RL6 698 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 YIPF4Q9BSR8 244 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 GABARAPL3Q9BY60 117 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 KLHL20Q9Y2M5 609 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 SCN3AQ9NY46 2000 aa15.67■□□□□ 0.1
CCDC88B-210ENST00000494566 SOX9P48436 509 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 LIM2P55344 173 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 TAS2R38P59533 333 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 CCDC85BQ15834 202 aaPredicted RBP15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 ZNF181Q2M3W8 571 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 KHDRBS2Q5VWX1 349 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 KRT78Q8N1N4 520 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 TCEANCQ8N8B7 351 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 OR5D16Q8NGK9 328 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 OR9Q1Q8NGQ5 310 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 TM4SF18Q96CE8 201 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 CXorf40BQ96DE9 158 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 NLNQ9BYT8 704 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 IGFLR1Q9H665 355 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 CPNE5Q9HCH3 593 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 LHX9Q9NQ69 397 aa15.66■□□□□ 0.1
CCDC88B-210ENST00000494566 IMP3Q9NV31 184 aaKnown RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms