RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 HSDL2Q6YN16 418 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 C16orf47Q6ZP98 133 aaPredicted RBP13.73□□□□□ -0.21
USP4-212ENST00000486549 LGI4Q8N135 537 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 CISD2Q8N5K1 135 aaKnown RBP13.73□□□□□ -0.21
USP4-212ENST00000486549 GALNT11Q8NCW6 608 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 OR6Y1Q8NGX8 325 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 OR2T11Q8NH01 316 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 SUN3Q8TAQ9 357 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 ZNF721Q8TF20 911 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 RIT1Q92963 219 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 TLCD1Q96CP7 247 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 UTP23Q9BRU9 249 aaKnown RBP13.73□□□□□ -0.21
USP4-212ENST00000486549 ZNF395Q9H8N7 513 aaPredicted RBP13.73□□□□□ -0.21
USP4-212ENST00000486549 LRTM1Q9HBL6 345 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 PFDN4Q9NQP4 134 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 ZDHHC2Q9UIJ5 367 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 ERVK-19Q9WJR5 959 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 NBASA2RRP1 2371 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 TRAV17A0A0B4J275 112 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 FGF4P08620 206 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 CPMP14384 443 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 NT5EP21589 574 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 PTGER1P34995 402 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 FEN1P39748 380 aaKnown RBP13.72□□□□□ -0.21
USP4-212ENST00000486549 CD96P40200 585 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 RPL38P63173 70 aaKnown RBP13.72□□□□□ -0.21
USP4-212ENST00000486549 ZNF763Q0D2J5 394 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 UBAP2LQ14157 1087 aaKnown RBP13.72□□□□□ -0.21
USP4-212ENST00000486549 OR1C1Q15619 314 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 UGT3A2Q3SY77 523 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 GALNTL6Q49A17 601 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 C6orf163Q5TEZ5 329 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 ZNF468Q5VIY5 522 aaPredicted RBP13.72□□□□□ -0.21
USP4-212ENST00000486549 GALNT18Q6P9A2 607 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 GALNT12Q8IXK2 581 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 EXOSC8Q96B26 276 aaKnown RBP13.72□□□□□ -0.21
USP4-212ENST00000486549 ARL8AQ96BM9 186 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 C19orf60Q96EN9 201 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 C11orf24Q96F05 449 aaPredicted RBP13.72□□□□□ -0.21
USP4-212ENST00000486549 SENP5Q96HI0 755 aaPredicted RBP13.72□□□□□ -0.21
USP4-212ENST00000486549 FBXL20Q96IG2 436 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 ART5Q96L15 291 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 SIGLEC12Q96PQ1 595 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 C1orf109Q9NX04 203 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 SIRT5Q9NXA8 310 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 UTS2RQ9UKP6 389 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 CES1P1Q9UKY3 287 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 PSME2Q9UL46 239 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 CCL27Q9Y4X3 112 aa13.72□□□□□ -0.21
USP4-212ENST00000486549 UBR5O95071 2799 aaPredicted RBP13.72□□□□□ -0.21
USP4-212ENST00000486549 SHANK1Q9Y566 2161 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 TMEM114B3SHH9 223 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 WWP2O00308 870 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 PRAMEF2O60811 474 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 ITGA10O75578 1167 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 OR2J2O76002 312 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 DRD2P14416 443 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 H2AFXP16104 143 aaPredicted RBP13.71□□□□□ -0.21
USP4-212ENST00000486549 PORP16435 677 aaPredicted RBP13.71□□□□□ -0.21
USP4-212ENST00000486549 PRPH2P23942 346 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 ABCE1P61221 599 aaKnown RBP13.71□□□□□ -0.21
USP4-212ENST00000486549 RNF4P78317 190 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 C2orf80Q0P641 193 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 HEPACAMQ14CZ8 416 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 SPRED3Q2MJR0 410 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 ZNF766Q5HY98 468 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 AGBL2Q5U5Z8 902 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 SPINK14Q6IE38 97 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 NOXRED1Q6NXP6 359 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 Q6ZSR9 355 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 HDXQ7Z353 690 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 FAM26EQ8N5C1 309 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 TMEM156Q8N614 296 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 ZNF781Q8N8C0 355 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 SNRNP40Q96DI7 357 aaKnown RBP13.71□□□□□ -0.21
USP4-212ENST00000486549 GAL3ST4Q96RP7 486 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 HES7Q9BYE0 225 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 BRINP2Q9C0B6 783 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 KLHL1Q9NR64 748 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 ASF1BQ9NVP2 202 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 NKIRAS1Q9NYS0 192 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 LRFN1Q9P244 771 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 GIMAP2Q9UG22 337 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 COPG1Q9Y678 874 aaKnown RBP13.71□□□□□ -0.21
USP4-212ENST00000486549 ZNF780BQ9Y6R6 833 aa13.71□□□□□ -0.21
USP4-212ENST00000486549 IGKV3-11P04433 115 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 CT62P0C5K7 136 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 CSNK2A2P19784 350 aaPredicted RBP13.7□□□□□ -0.22
USP4-212ENST00000486549 GRK2P25098 689 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 SSTR4P31391 388 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 GALNSP34059 522 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 SLC1A6P48664 564 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 CYB561P49447 251 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 SSR4P51571 173 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 HK2P52789 917 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 WDR4P57081 412 aaKnown RBP13.7□□□□□ -0.22
USP4-212ENST00000486549 DUSP2Q05923 314 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 STX3Q13277 289 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 RNF111Q6ZNA4 994 aa13.7□□□□□ -0.22
USP4-212ENST00000486549 RNF165Q6ZSG1 346 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms