RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SPAG9O60271 1321 aaKnown RBP2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 IGLV4-3A0A075B6K6 122 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 A0A1W2PQ72 361 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 SH3PXD2BA1X283 911 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 MACROD2A1Z1Q3 448 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 CCDC69A6NI79 296 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 SLC9B1P1A6NJY1 282 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 INPP4BO15327 924 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 ATP6V1G1O75348 118 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 SH3BGRLO75368 114 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 CSO75390 466 aaKnown RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 TXNDC12O95881 172 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 LYNP07948 512 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 CT45A8P0DMV1 189 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 CT45A9P0DMV2 189 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 KLK2P20151 261 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 GLRA1P23415 457 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 STIP1P31948 543 aaKnown RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 RPL34P49207 117 aaKnown RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 NDST2P52849 883 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 SLC12A3P55017 1021 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 CASP9P55211 416 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 ABCE1P61221 599 aaKnown RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 HERV-K104P63124 156 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 RBBP4Q09028 425 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 TSTA3Q13630 321 aaPredicted RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 GCKRQ14397 625 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 OR1C1Q15619 314 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 MLF2Q15773 248 aaPredicted RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 RFTN2Q52LD8 501 aaPredicted RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 CT45A2Q5DJT8 189 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 PRAMEF7Q5VXH5 474 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 RAB12Q6IQ22 244 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 NEPROQ6NW34 567 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 TATDN1Q6P1N9 297 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 WDR49Q8IV35 697 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 CHCHD4Q8N4Q1 142 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 EXOC6Q8TAG9 804 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 GLYATL1Q969I3 302 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 MRPL53Q96EL3 112 aaKnown RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 B3GALT6Q96L58 329 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 TMEM237Q96Q45 408 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 RUFY1Q96T51 708 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 TEX13AQ9BXU3 409 aaPredicted RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 WWP1Q9H0M0 922 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 GANQ9H2C0 597 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 CXXC4Q9H2H0 198 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 PARLQ9H300 379 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 DCLRE1BQ9H816 532 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 JPT2Q9H910 190 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 PLEKHA3Q9HB20 300 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 UBE2TQ9NPD8 197 aaPredicted RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 ANO10Q9NW15 660 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 TECRQ9NZ01 308 aaKnown RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 TRIM10Q9UDY6 481 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 IL19Q9UHD0 177 aa2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 STRAPQ9Y3F4 350 aaKnown RBP2.36□□□□□ -2.03
CCDC88A-212ENST00000474059 A0A087WWV3 80 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 TRBV2A0A0J9YWF9 115 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 OR5H15A6NDH6 313 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 HTATSF1O43719 755 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 SNAP91O60641 907 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 CSDE1O75534 798 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 OR6A2O95222 327 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 TPBGLP0DKB5 382 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF18P17022 549 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF19P17023 458 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 AHCYP23526 432 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 FCARP24071 287 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 PKLRP30613 574 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 NSFP46459 744 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 PITPNBP48739 271 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 HNRNPFP52597 415 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 STARD6P59095 220 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 SRP54P61011 504 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 PPP1R8Q12972 351 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 KIAA0141Q14154 515 aaPredicted RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF146Q15072 292 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 PKN2Q16513 984 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 KNOP1Q1ED39 458 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 DLEU7Q6UYE1 221 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF730Q6ZMV8 503 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 C1orf186Q6ZWK4 172 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 TMUB2Q71RG4 321 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 TIPARPQ7Z3E1 657 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 ADAMTSL2Q86TH1 951 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 C17orf64Q86WR6 236 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 TBC1D10CQ8IV04 446 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 CCNYQ8ND76 341 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 TMEM185AQ8NFB2 350 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 OR52E1Q8NGJ3 308 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 KIAA1524Q8TCG1 905 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 SSC4DQ8WTU2 575 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 UBE2Q2Q8WVN8 375 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 C11orf52Q96A22 123 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 ALKBH3Q96Q83 286 aaPredicted RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 FUNDC2Q9BWH2 189 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 ABCG4Q9H172 646 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 TRPV6Q9H1D0 765 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms