RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 DMGDHQ9UI17 866 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 PCTPQ9UKL6 214 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 ERVK-19Q9WJR5 959 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 RNF6Q9Y252 685 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 FREM3P0C091 2139 aa17.33■□□□□ 0.37
CCDC88B-206ENST00000473405 NINQ8N4C6 2090 aa17.33■□□□□ 0.37
CCDC88B-206ENST00000473405 A0A1B0GVC2 190 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 A0A1W2PS29 197 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 OR14I1A6ND48 311 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 NPIPA2E9PIF3 369 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 NPIPA3F8WFD2 350 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 DYRK3O43781 588 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 SEMA3DO95025 777 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 CLDN9O95484 217 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 GBAP04062 536 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 IGFBP2P18065 325 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 ECHS1P30084 290 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 PIGAP37287 484 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 TFF3Q07654 80 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 EBPQ15125 230 aaKnown RBP17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 WHAMMP3Q1A5X7 153 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 TMEM211Q6ICI0 200 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 CYP20A1Q6UW02 462 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 TRILQ7L0X0 811 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 SLC15A4Q8N697 577 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 NOA1Q8NC60 698 aaKnown RBP17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 SLC22A8Q8TCC7 542 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 PAQR8Q8TEZ7 354 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 PHF21BQ96EK2 531 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 GAL3ST4Q96RP7 486 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 SMC6Q96SB8 1091 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 PAFAH2Q99487 392 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 PELOQ9BRX2 385 aaKnown RBP17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 ZBTB26Q9HCK0 441 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 NPDC1Q9NQX5 325 aaPredicted RBP17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 TEX10Q9NXF1 929 aaPredicted RBP17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 XPR1Q9UBH6 696 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 TNFRSF10DQ9UBN6 386 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 FAM215AQ9Y5M1 114 aa17.33■□□□□ 0.36
CCDC88B-206ENST00000473405 STX16-NPEPL1H3BU86 382 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 STX16O14662 325 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 OR10H2O60403 315 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 URI1O94763 535 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 FBXO45P0C2W1 286 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 SSTR2P30874 369 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 CHRNB4P30926 498 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 NUP107P57740 925 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 KRTAP10-9P60411 292 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 ZNF267Q14586 743 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 GXYLT1Q4G148 440 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 RNF111Q6ZNA4 994 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 CCDC71Q8IV32 467 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 MMGT1Q8N4V1 131 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 OR5M9Q8NGP3 310 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 LILRB4Q8NHJ6 448 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 ASB5Q8WWX0 329 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 RIT1Q92963 219 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 NTMT1Q9BV86 223 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 ZNF703Q9H7S9 590 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 PROK2Q9HC23 129 aa17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 MTRF1LQ9UGC7 380 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 CHCHD2Q9Y6H1 151 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-206ENST00000473405 MTORP42345 2549 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 A0A1B0GTL3 188 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 ATP6AP2A0A1C7CYW4 349 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 NKX2-6A6NCS4 301 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 LRRC3CA6NJW4 275 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 AQP7O14520 342 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 PGRMC2O15173 223 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 ATP6AP2O75787 350 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 INHBAP08476 426 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 RBP1P09455 135 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 RFPL3SP0C7P2 107 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 SLC35E2P0CK97 266 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 ENDOUP21128 410 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 GALNSP34059 522 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 CCNG1P51959 295 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 PMPCAQ10713 525 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 PRAMEF20Q5VT98 475 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 SLC22A10Q63ZE4 541 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 FRG2Q64ET8 278 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 OR52E8Q6IFG1 317 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 MEX3BQ6ZN04 569 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 SLC29A4Q7RTT9 530 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 FBXW8Q8N3Y1 598 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 ZNF441Q8N8Z8 693 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 OR10G3Q8NGC4 313 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 DCAKDQ8WVC6 231 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 RND1Q92730 232 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 C14orf79Q96F83 325 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 FRG2BQ96QU4 278 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 FMO2Q99518 471 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 SERPINI1Q99574 410 aa17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 MRPL1Q9BYD6 325 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-206ENST00000473405 ITPR3Q14573 2671 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 IQANK1A0A1B0GTG1 560 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 OR6C76A6NM76 312 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 FAM90A27PA6NNH2 459 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms