RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 DNAJB13P59910 316 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 ERVK-8P63133 956 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 SLC18A2Q05940 514 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 PIGGQ5H8A4 983 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 CFAP157Q5JU67 520 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 TCHHL1Q5QJ38 904 aaPredicted RBP21.3■■□□□ 1
PTPN4-208ENST00000460289 C1QL3Q5VWW1 255 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 WDR93Q6P2C0 686 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 EMBQ6PCB8 327 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 RNF111Q6ZNA4 994 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 SLC29A4Q7RTT9 530 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 FJX1Q86VR8 437 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 SIAH3Q8IW03 269 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 C9orf40Q8IXQ3 194 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 RIBC1Q8N443 379 aaPredicted RBP21.3■■□□□ 1
PTPN4-208ENST00000460289 SLC15A4Q8N697 577 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 CHTF18Q8WVB6 975 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 TM4SF18Q96CE8 201 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 FAIM2Q9BWQ8 316 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 MID1IP1Q9NPA3 183 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 MID2Q9UJV3 735 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 ERVK-19Q9WJR5 959 aa21.3■■□□□ 1
PTPN4-208ENST00000460289 SPTAN1Q13813 2472 aaKnown RBP21.29■■□□□ 1
PTPN4-208ENST00000460289 TRGV8A0A0C4DH27 118 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 GOLGA6L10A6NI86 522 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 OR6C76A6NM76 312 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 WISP2O76076 250 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 NAGLUP54802 743 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 IFFO1Q0D2I5 559 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 ASPHQ12797 758 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 SLC48A1Q6P1K1 146 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 BNC2Q6ZN30 1099 aaPredicted RBP21.29■■□□□ 1
PTPN4-208ENST00000460289 RTL4Q6ZR62 310 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 GALNT12Q8IXK2 581 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 ZFP62Q8NB50 900 aaPredicted RBP21.29■■□□□ 1
PTPN4-208ENST00000460289 GOLM1Q8NBJ4 401 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 SLC22A8Q8TCC7 542 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 AGAP11Q8TF27 550 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 ROPN1BQ9BZX4 212 aaPredicted RBP21.29■■□□□ 1
PTPN4-208ENST00000460289 TSPAN10Q9H1Z9 355 aaPredicted RBP21.29■■□□□ 1
PTPN4-208ENST00000460289 CXorf21Q9HAI6 301 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 ROPN1Q9HAT0 212 aaPredicted RBP21.29■■□□□ 1
PTPN4-208ENST00000460289 OXSMQ9NWU1 459 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 MCM8Q9UJA3 840 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 TIMM22Q9Y584 194 aa21.29■■□□□ 1
PTPN4-208ENST00000460289 SPTBN1Q01082 2364 aaKnown RBP21.28■■□□□ 1
PTPN4-208ENST00000460289 SERTM1A2A2V5 107 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 SLC19A2O60779 497 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 CPMP14384 443 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 PORP16435 677 aaPredicted RBP21.28■■□□□ 1
PTPN4-208ENST00000460289 SLC37A1P57057 533 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 SPIN4Q56A73 249 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 RNFT1Q5M7Z0 435 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 C6orf163Q5TEZ5 329 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 FRMD7Q6ZUT3 714 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 C4orf33Q8N1A6 199 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 GHDCQ8N2G8 530 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 OR2W6PQ8NHA6 318 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 C16orf52Q8NHV5 167 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 DOK4Q8TEW6 326 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 AENQ8WTP8 325 aaKnown RBP21.28■■□□□ 1
PTPN4-208ENST00000460289 MAGED4Q96JG8 741 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 IQCGQ9H095 443 aaKnown RBP21.28■■□□□ 1
PTPN4-208ENST00000460289 CES1P1Q9UKY3 287 aa21.28■■□□□ 1
PTPN4-208ENST00000460289 TFECO14948 347 aaPredicted RBP21.27■■□□□ 1
PTPN4-208ENST00000460289 CA7P43166 264 aa21.27■■□□□ 1
PTPN4-208ENST00000460289 GPR85P60893 370 aa21.27■■□□□ 1
PTPN4-208ENST00000460289 ACSM2AQ08AH3 577 aa21.27■■□□□ 1
PTPN4-208ENST00000460289 ZNF750Q32MQ0 723 aa21.27■■□□□ 1
PTPN4-208ENST00000460289 ACSM2BQ68CK6 577 aa21.27■■□□□ 1
PTPN4-208ENST00000460289 MTFR2Q6P444 385 aa21.27■■□□□ 1
PTPN4-208ENST00000460289 SPPL2CQ8IUH8 684 aa21.27■■□□□ 1
PTPN4-208ENST00000460289 DND1Q8IYX4 353 aaKnown RBP21.27■■□□□ 1
PTPN4-208ENST00000460289 GAL3ST4Q96RP7 486 aa21.27■■□□□ 1
PTPN4-208ENST00000460289 KCNA7Q96RP8 456 aa21.27■■□□□ 1
PTPN4-208ENST00000460289 ACPTQ9BZG2 426 aa21.27■■□□□ 1
PTPN4-208ENST00000460289 DOPEY1Q5JWR5 2465 aa21.27■□□□□ 0.99
PTPN4-208ENST00000460289 ICE1Q9Y2F5 2266 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 A1L4Q6 167 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 UBFD1O14562 309 aaKnown RBP21.26■□□□□ 0.99
PTPN4-208ENST00000460289 ZNF354AO60765 605 aaPredicted RBP21.26■□□□□ 0.99
PTPN4-208ENST00000460289 CRCPO75575 148 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 ERAL1O75616 437 aaKnown RBP21.26■□□□□ 0.99
PTPN4-208ENST00000460289 CHN1P15882 459 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 CSNK2A2P19784 350 aaPredicted RBP21.26■□□□□ 0.99
PTPN4-208ENST00000460289 CNR1P21554 472 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 HTR6P50406 440 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 FUT7Q11130 342 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 LIPMQ5VYY2 423 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 FAM219BQ5XKK7 198 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 MAMDC2Q7Z304 686 aaPredicted RBP21.26■□□□□ 0.99
PTPN4-208ENST00000460289 CAVIN3Q969G5 261 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 WWTR1Q9GZV5 400 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 C12orf65Q9H3J6 166 aaKnown RBP21.26■□□□□ 0.99
PTPN4-208ENST00000460289 SACM1LQ9NTJ5 587 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 DEPPQ9NTK1 212 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 MKS1Q9NXB0 559 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 SUCOQ9UBS9 1254 aaKnown RBP21.26■□□□□ 0.99
PTPN4-208ENST00000460289 ZNF835Q9Y2P0 537 aa21.26■□□□□ 0.99
PTPN4-208ENST00000460289 UTP20O75691 2785 aaKnown RBP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms