RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 MYEF2Q9P2K5 600 aaKnown RBP5.13□□□□□ -1.59
VPS41-209ENST00000457055 ABCD2Q9UBJ2 740 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 HEY2Q9UBP5 337 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 EIF3KQ9UBQ5 218 aaKnown RBP5.13□□□□□ -1.59
VPS41-209ENST00000457055 FBXL17Q9UF56 701 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 UBQLN2Q9UHD9 624 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 SIX4Q9UIU6 781 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 ADAM21Q9UKJ8 722 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 SCML1Q9UN30 329 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 SORCS3Q9UPU3 1222 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 MRPS33Q9Y291 106 aaKnown RBP5.13□□□□□ -1.59
VPS41-209ENST00000457055 GDAQ9Y2T3 454 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 ACOT9Q9Y305 439 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 DHRS7Q9Y394 339 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 ADAM18Q9Y3Q7 739 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 USH1CQ9Y6N9 552 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 PDS5AQ29RF7 1337 aaKnown RBP5.13□□□□□ -1.59
VPS41-209ENST00000457055 CNTNAP2Q9UHC6 1331 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 SCN4AP35499 1836 aa5.13□□□□□ -1.59
VPS41-209ENST00000457055 AFDNP55196 1824 aaKnown RBP5.13□□□□□ -1.59
VPS41-209ENST00000457055 KDM6AO15550 1401 aaPredicted RBP5.13□□□□□ -1.59
VPS41-209ENST00000457055 POLR2AP24928 1970 aaKnown RBP5.13□□□□□ -1.59
VPS41-209ENST00000457055 FER1L6Q2WGJ9 1857 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 SDR42E2A6NKP2 422 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 YDJCA8MPS7 323 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 EFCAB8A8MWE9 144 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 LINC00587B1AMM8 73 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 NUPL2O15504 423 aaKnown RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 KDELR3O43731 214 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 RSL1D1O76021 490 aaKnown RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 CXCL14O95715 111 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 NUDT3O95989 172 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 PIGRP01833 764 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 ALPIP09923 528 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 FAM228BP0C875 321 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 SLC35E2BP0CK96 405 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 SLC35E2P0CK97 266 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 RNF224P0DH78 156 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 ZNF7P17097 686 aaPredicted RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 ACHEP22303 614 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 S100PP25815 95 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 KLRK1P26718 216 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 HOXC9P31274 260 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 AKT2P31751 481 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 STX2P32856 288 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 CYP2C18P33260 490 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 HSPA9P38646 679 aaKnown RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 WASP42768 502 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 PRCPP42785 496 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 SLC6A12P48065 614 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 CXCR3P49682 368 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 RAB9AP51151 201 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 MANFP55145 182 aaKnown RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 PKNOX1P55347 436 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 MZT1Q08AG7 82 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 PPP1R8Q12972 351 aaKnown RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 NAE1Q13564 534 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 TGFBIQ15582 683 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 TOMM34Q15785 309 aaPredicted RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 MAN2A1Q16706 1144 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 FAM214AQ32MH5 1076 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 TRIM60Q495X7 471 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 IQCCQ4KMZ1 466 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 ATP13A5Q4VNC0 1218 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 XKR6Q5GH73 641 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 FAM47AQ5JRC9 791 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 C6orf136Q5SQH8 315 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 CELF3Q5SZQ8 465 aaKnown RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 HACD4Q5VWC8 232 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 ATG9BQ674R7 924 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 KRT39Q6A163 491 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 KIAA0930Q6ICG6 404 aaPredicted RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 ESRP1Q6NXG1 681 aaKnown RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 VSTM1Q6UX27 236 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 PARS2Q7L3T8 475 aaKnown RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 PEX26Q7Z412 305 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 YTHDF3Q7Z739 585 aaKnown RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 CATSPERDQ86XM0 798 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 PHYKPLQ8IUZ5 450 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 ARHGAP12Q8IWW6 846 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 ZGPATQ8N5A5 531 aaKnown RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 FAM89BQ8N5H3 189 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 CPSF7Q8N684 471 aaKnown RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 C8orf58Q8NAV2 365 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 COLGALT1Q8NBJ5 622 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 CLEC1AQ8NC01 280 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 TMEM35BQ8NCS4 154 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 OR5T3Q8NGG3 340 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 OR4D10Q8NGI6 311 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 OR4D6Q8NGJ1 314 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 NANPQ8TBE9 248 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 ARNTL2Q8WYA1 636 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 C22orf15Q8WYQ4 148 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 GTF2H4Q92759 462 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 SEMA4DQ92854 862 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 ELP4Q96EB1 424 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 C16orf58Q96GQ5 468 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 PACRGQ96M98 296 aaPredicted RBP5.12□□□□□ -1.59
VPS41-209ENST00000457055 RILPQ96NA2 401 aa5.12□□□□□ -1.59
VPS41-209ENST00000457055 ZIM3Q96PE6 472 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms