RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 RALYQ9UKM9 306 aaKnown RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 HPCAL4Q9UM19 191 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 PACSIN2Q9UNF0 486 aaPredicted RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 AURKCQ9UQB9 309 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 KCNK6Q9Y257 313 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 DLGAP4Q9Y2H0 992 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 COL2A1P02458 1487 aaPredicted RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 MYH1P12882 1939 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 CDK5RAP2Q96SN8 1893 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 FOCADQ5VW36 1801 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 CNTNAP1P78357 1384 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 UBE4BO95155 1302 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 TRAV18A0A075B6X5 111 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 A0A087X0K7 114 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 CFAP73A6NFT4 308 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 ARHGAP42A6NI28 874 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 PDE9AO76083 593 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 GAS8O95995 478 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 DLATP10515 647 aaKnown RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 HLA-DOBP13765 273 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 UCHL3P15374 230 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 DPEP1P16444 411 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 UGT1A6P19224 532 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 ASMTP46597 345 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 GLIPR1P48060 266 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 CAMLGP49069 296 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 FMO5P49326 533 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 TKTL1P51854 596 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 MYL7Q01449 175 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 DLG1Q12959 904 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 PPP1R8Q12972 351 aaKnown RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 LCP2Q13094 533 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 TSTA3Q13630 321 aaPredicted RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 ACKR1Q16570 336 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 CFAP221Q4G0U5 840 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 CEP55Q53EZ4 464 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 TAF1BQ53T94 588 aaPredicted RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 SPDYCQ5MJ68 293 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 AGAP6Q5VW22 663 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 TAF3Q5VWG9 929 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 OR6B2Q6IFH4 312 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 C8orf74Q6P047 294 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 TTC27Q6P3X3 843 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 PSRC1Q6PGN9 363 aaPredicted RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 ABRAXAS1Q6UWZ7 409 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 SIGLEC15Q6ZMC9 328 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 C1orf186Q6ZWK4 172 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 ZNF571Q7Z3V5 609 aaPredicted RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 ADAMTSL2Q86TH1 951 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 ZNF554Q86TJ5 538 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 LAX1Q8IWV1 398 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 EID3Q8N140 333 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 THEM5Q8N1Q8 247 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 RFLNBQ8N5W9 214 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 U2AF1L4Q8WU68 220 aaKnown RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 SLC35C1Q96A29 364 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 DTD2Q96FN9 168 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 TSSK2Q96PF2 358 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 ZNF385AQ96PM9 386 aaKnown RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 RASL10BQ96S79 203 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 KCNK16Q96T55 309 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 NDNQ99608 321 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 HSD17B14Q9BPX1 270 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 DDX50Q9BQ39 737 aaKnown RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 CCDC3Q9BQI4 270 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 LXNQ9BS40 222 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 TRMT61BQ9BVS5 477 aaKnown RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 SDCBP2Q9H190 292 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 TLE6Q9H808 572 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 C10orf88Q9H8K7 445 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 VIPAS39Q9H9C1 493 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 PARVGQ9HBI0 331 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 APOBEC3GQ9HC16 384 aaKnown RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 A4GALTQ9NPC4 353 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 SIX2Q9NPC8 291 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 MED4Q9NPJ6 270 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 POLE3Q9NRF9 147 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 AGPAT3Q9NRZ7 376 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 GPR173Q9NS66 373 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 WRAP73Q9P2S5 460 aaPredicted RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 RNF14Q9UBS8 474 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 KCNN3Q9UGI6 736 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 NOCTQ9UK39 431 aaKnown RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 DNAJC12Q9UKB3 198 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 SLC7A7Q9UM01 511 aa3.76□□□□□ -1.81
VPS29-202ENST00000447578 BZW2Q9Y6E2 419 aaKnown RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 GREB1LQ9C091 1923 aaPredicted RBP3.76□□□□□ -1.81
VPS29-202ENST00000447578 PFASO15067 1338 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 FRMPD4Q14CM0 1322 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 SIPA1L1O43166 1804 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 NOTCH3Q9UM47 2321 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 BTNL10A8MVZ5 291 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 TMCO5BA8MYB1 307 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 C17orf105B2RV13 164 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 HNRNPCL2B2RXH8 293 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 ZNF197O14709 1029 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 MAGEB2O15479 319 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 ACSL4O60488 711 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 ATP6V1G1O75348 118 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 GMNNO75496 209 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms