RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 ENY2Q9NPA8 101 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 C8orf4Q9NR00 106 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 ERVK-18Q9QC07 812 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 EDARQ9UNE0 448 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 CACNG3O60359 315 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 ABLIM3O94929 683 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 CSN2P05814 226 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 CPOXP36551 454 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 MLLT10P55197 1068 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 CHRNEQ04844 493 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 TRAP1Q12931 704 aaKnown RBP11.53□□□□□ -0.56
NEK1-201ENST00000439128 RBM48Q5RL73 367 aaKnown RBP11.53□□□□□ -0.56
NEK1-201ENST00000439128 ZC3H3Q8IXZ2 948 aaKnown RBP11.53□□□□□ -0.56
NEK1-201ENST00000439128 GNPDA2Q8TDQ7 276 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 NARS2Q96I59 477 aaKnown RBP11.53□□□□□ -0.56
NEK1-201ENST00000439128 FN3KQ9H479 309 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 PCDHGB2Q9Y5G2 931 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 COMMD3-BMI1R4GMX3 469 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 PTDSS1P48651 473 aaKnown RBP11.53□□□□□ -0.56
NEK1-201ENST00000439128 CTSCP53634 463 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 EFR3AQ14156 821 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 ZDHHC24Q6UX98 284 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 CCDC80Q76M96 950 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 LINGO2Q7L985 606 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 TRAPPC6BQ86SZ2 158 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 GRAMD2AQ8IUY3 354 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 CHCHD6Q9BRQ6 235 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 OR51B6Q9H340 312 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 ERVK-19Q9WJR5 959 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 LIPT1Q9Y234 373 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 N4BP2Q86UW6 1770 aaPredicted RBP11.53□□□□□ -0.56
NEK1-201ENST00000439128 NUP98P52948 1817 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 LDB3O75112 727 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 SOX30O94993 753 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 DIRAS1O95057 198 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 APLNRP35414 380 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 OR1E2P47887 323 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 SNU13P55769 128 aaKnown RBP11.53□□□□□ -0.56
NEK1-201ENST00000439128 CRYZQ08257 329 aaKnown RBP11.53□□□□□ -0.56
NEK1-201ENST00000439128 CYBRD1Q53TN4 286 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 FAM180BQ6P0A1 224 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 IGDCC3Q8IVU1 814 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 CBARPQ8N350 705 aaPredicted RBP11.53□□□□□ -0.56
NEK1-201ENST00000439128 OR9K2Q8NGE7 335 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 OR2L8Q8NGY9 312 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 ERMAPQ96PL5 475 aaPredicted RBP11.53□□□□□ -0.56
NEK1-201ENST00000439128 OR52B2Q96RD2 323 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 NGBQ9NPG2 151 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 VNN3Q9NY84 501 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 PLEKHA6Q9Y2H5 1048 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 R4GN57 208 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 NHSL1Q5SYE7 1610 aa11.53□□□□□ -0.56
NEK1-201ENST00000439128 EEF1E1-BLOC1S5C9J1V9 151 aa11.52□□□□□ -0.56
NEK1-201ENST00000439128 LOC110117498-PIK3R3F6TDL0 507 aa11.52□□□□□ -0.56
NEK1-201ENST00000439128 EEF1E1O43324 174 aaKnown RBP11.52□□□□□ -0.56
NEK1-201ENST00000439128 CFL1P23528 166 aaKnown RBP11.52□□□□□ -0.56
NEK1-201ENST00000439128 C6orf120Q7Z4R8 191 aa11.52□□□□□ -0.56
NEK1-201ENST00000439128 OR2A12Q8NGT7 310 aa11.52□□□□□ -0.56
NEK1-201ENST00000439128 PIK3R3Q92569 461 aa11.52□□□□□ -0.56
NEK1-201ENST00000439128 RBM24Q9BX46 236 aaKnown RBP11.52□□□□□ -0.56
NEK1-201ENST00000439128 C5AR2Q9P296 337 aa11.52□□□□□ -0.56
NEK1-201ENST00000439128 PLATP00750 562 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 SLC3A1Q07837 685 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 DENND5AQ6IQ26 1287 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 ZNF565Q8N9K5 539 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 C19orf47Q8N9M1 422 aaKnown RBP11.52□□□□□ -0.57
NEK1-201ENST00000439128 PITX2Q99697 317 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 MKLN1Q9UL63 735 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 LOC102723532A0A0G2JNH3 316 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 OPN1LWP04000 364 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 EEF1A1P68104 462 aaKnown RBP11.52□□□□□ -0.57
NEK1-201ENST00000439128 TFF2Q03403 129 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 SLC36A3Q495N2 470 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 ZBTB46Q86UZ6 589 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 FTMTQ8N4E7 242 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 TMEM121BQ9BXQ6 578 aaPredicted RBP11.52□□□□□ -0.57
NEK1-201ENST00000439128 ATP13A2Q9NQ11 1180 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 OR6C2Q9NZP2 312 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 TEX13CA0A0J9YWL9 993 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 CREB1P16220 341 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 GADD45AP24522 165 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 FASLGP48023 281 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 HK3P52790 923 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 ARPC4P59998 168 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 FAM189BP81408 668 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 ERI1Q8IV48 349 aaKnown RBP11.52□□□□□ -0.57
NEK1-201ENST00000439128 TIGD4Q8IY51 512 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 PLD6Q8N2A8 252 aaKnown RBP11.52□□□□□ -0.57
NEK1-201ENST00000439128 OR51A7Q8NH64 312 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 CRYGNQ8WXF5 182 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 SLC12A9Q9BXP2 914 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 PCDHAC1Q9H158 963 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 CSNK1G1Q9HCP0 422 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 KDM3BQ7LBC6 1761 aa11.52□□□□□ -0.57
NEK1-201ENST00000439128 C5P01031 1676 aa11.51□□□□□ -0.57
NEK1-201ENST00000439128 SOCS2O14508 198 aa11.51□□□□□ -0.57
NEK1-201ENST00000439128 NADSYN1Q6IA69 706 aa11.51□□□□□ -0.57
NEK1-201ENST00000439128 OPN5Q6U736 354 aa11.51□□□□□ -0.57
NEK1-201ENST00000439128 LCTLQ6UWM7 567 aa11.51□□□□□ -0.57
NEK1-201ENST00000439128 ALKAL1Q6UXT8 129 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms