RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 C7orf57Q8NEG2 295 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 SUN3Q8TAQ9 357 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 M1APQ8TC57 530 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 STON2Q8WXE9 905 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 PPWD1Q96BP3 646 aaKnown RBP11.59□□□□□ -0.55
USP40-205ENST00000430158 WBP1Q96G27 269 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 VPS50Q96JG6 964 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 TSSK3Q96PN8 268 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 ZNF317Q96PQ6 595 aaPredicted RBP11.59□□□□□ -0.55
USP40-205ENST00000430158 OR52B2Q96RD2 323 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 LPAR4Q99677 370 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 NPAS2Q99743 824 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 ZNF552Q9H707 407 aaPredicted RBP11.59□□□□□ -0.55
USP40-205ENST00000430158 CXorf21Q9HAI6 301 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 KCNK13Q9HB14 408 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 MMP25Q9NPA2 562 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 PNO1Q9NRX1 252 aaKnown RBP11.59□□□□□ -0.55
USP40-205ENST00000430158 ATP6V1HQ9UI12 483 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 GOLGA8QA0A0J9YX86 632 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 GOLGA8OA6NCC3 632 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 TMEM200CA6NKL6 621 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 GABRR3A8MPY1 467 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 GOLGA8NF8WBI6 632 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 K7EM74 188 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 HRKO00198 91 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 PDGFAP04085 211 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 ATP1B1P05026 303 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 CT62P0C5K7 136 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 ITGAMP11215 1152 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 LBPP18428 481 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 PIK3R1P27986 724 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 FRKP42685 505 aaPredicted RBP11.58□□□□□ -0.56
USP40-205ENST00000430158 IDH3AP50213 366 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 CCL11P51671 97 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 ACTN3Q08043 901 aaPredicted RBP11.58□□□□□ -0.56
USP40-205ENST00000430158 MYBPC3Q14896 1274 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 HEPACAMQ14CZ8 416 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 EXT1Q16394 746 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 SPRED3Q2MJR0 410 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 CGB2Q6NT52 195 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 FAM180BQ6P0A1 224 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 TICAM1Q8IUC6 712 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 TMEM132CQ8N3T6 1108 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 ZNF321PQ8N8H1 164 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 FNDC5Q8NAU1 212 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 B3GNT7Q8NFL0 401 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 FDCSPQ8NFU4 85 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 CLHC1Q8NHS4 586 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 ZNF721Q8TF20 911 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 CTHRC1Q96CG8 243 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 SMAD5Q99717 465 aaKnown RBP11.58□□□□□ -0.56
USP40-205ENST00000430158 NUDT9Q9BW91 350 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 REEP4Q9H6H4 257 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 SLAMF7Q9NQ25 335 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 SLC35C2Q9NQQ7 365 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 ZNF639Q9UID6 485 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 UTS2RQ9UKP6 389 aa11.58□□□□□ -0.56
USP40-205ENST00000430158 PCDHGA9Q9Y5G4 932 aaKnown RBP11.58□□□□□ -0.56
USP40-205ENST00000430158 SMG1Q96Q15 3661 aaKnown RBP11.58□□□□□ -0.56
USP40-205ENST00000430158 C17orf105B2RV13 164 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 ERVH48-1M5A8F1 160 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 PRKNO60260 465 aaPredicted RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 FAM87AP0C7U9 286 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 ICAM2P13598 275 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 PORP16435 677 aaPredicted RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 CSNK2A2P19784 350 aaPredicted RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 MAPK1P28482 360 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 FEN1P39748 380 aaKnown RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 ASMTP46597 345 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 ALDH9A1P49189 494 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 CLDN8P56748 225 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 FUT7Q11130 342 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 MAP4K2Q12851 820 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 DUSP8Q13202 625 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 MAD2L1Q13257 205 aaPredicted RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 PRICKLE4Q2TBC4 344 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 LSM12Q3MHD2 195 aaKnown RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 TMEM198Q66K66 360 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 JMJD6Q6NYC1 403 aaPredicted RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 IGFL2Q6UWQ7 119 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 KBTBD2Q8IY47 623 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 KIF2BQ8N4N8 673 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 KRTCAP2Q8N6L1 136 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 CLEC1AQ8NC01 280 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 MORN4Q8NDC4 146 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 OR14A16Q8NHC5 309 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 DOK4Q8TEW6 326 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 GFM2Q969S9 779 aaKnown RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 EXOSC8Q96B26 276 aaKnown RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 KLHL29Q96CT2 875 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 COQ8BQ96D53 544 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 MTERF3Q96E29 417 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 SENP5Q96HI0 755 aaPredicted RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 THOC3Q96J01 351 aaKnown RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 DGAT2Q96PD7 388 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 EBF4Q9BQW3 602 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 PELOQ9BRX2 385 aaKnown RBP11.57□□□□□ -0.56
USP40-205ENST00000430158 LHPPQ9H008 270 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 ADNPQ9H2P0 1102 aa11.57□□□□□ -0.56
USP40-205ENST00000430158 AIG1Q9NVV5 245 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms