RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 DDX6P26196 483 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS54-203ENST00000409558 SIM1P81133 766 aaPredicted RBP12.69□□□□□ -0.38
VPS54-203ENST00000409558 DUSP2Q05923 314 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 RUNX3Q13761 415 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 DOC2BQ14184 412 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 NUDT13Q86X67 352 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 SLC35G5Q96KT7 338 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 DSN1Q9H410 356 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 EGLN3Q9H6Z9 239 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 EHD3Q9NZN3 535 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 SEMA7AO75326 666 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 GABARAPO95166 117 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 RASGRP1O95267 797 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 SRPRAP08240 638 aaKnown RBP12.69□□□□□ -0.38
VPS54-203ENST00000409558 ANXA8P13928 327 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 HSD3B1P14060 373 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 HSD3B2P26439 372 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 DRD3P35462 400 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 XKP51811 444 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 FGL2Q14314 439 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 C6orf132Q5T0Z8 1188 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 PARM1Q6UWI2 310 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 ZNF793Q6ZN11 406 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 OR9Q1Q8NGQ5 310 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 OR9A2Q8NGT5 310 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 TRUB1Q8WWH5 349 aaKnown RBP12.69□□□□□ -0.38
VPS54-203ENST00000409558 MGLLQ99685 303 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 CLN6Q9NWW5 311 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 GIN1Q9NXP7 522 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 SNRNP200O75643 2136 aaKnown RBP12.68□□□□□ -0.38
VPS54-203ENST00000409558 OR2A25A4D2G3 310 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 TLR4O00206 839 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 SLC22A1O15245 554 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 SERPINI2O75830 405 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 INHBBP09529 407 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 PVRP15151 417 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 ITGA2P17301 1181 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 DDCP20711 480 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 MC3RP41968 323 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 LBX1P52954 281 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 RELAQ04206 551 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 DEFB134Q4QY38 66 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 FAHD1Q6P587 224 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 GALNT13Q8IUC8 556 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 SLC7A13Q8TCU3 470 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 FGF14Q92915 247 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 GLIPR2Q9H4G4 154 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 DKK3Q9UBP4 350 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 POFUT2Q9Y2G5 429 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 HAT1O14929 419 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 PRKNO60260 465 aaPredicted RBP12.68□□□□□ -0.38
VPS54-203ENST00000409558 KIAA0513O60268 411 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 EML2O95834 649 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 CRISP1P54107 249 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 TPTEP56180 551 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 TAS2R38P59533 333 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 HTRA4P83105 476 aaPredicted RBP12.68□□□□□ -0.38
VPS54-203ENST00000409558 MLF2Q15773 248 aaPredicted RBP12.68□□□□□ -0.38
VPS54-203ENST00000409558 SNAPC1Q16533 368 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 TJAP1Q5JTD0 557 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 TOR1AIP1Q5JTV8 583 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 FRMPD2BQ6IN97 320 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 KLHDC8AQ8IYD2 350 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 OR52E1Q8NGJ3 308 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 SLC38A4Q969I6 547 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 PCDHGA2Q9Y5H1 932 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 TDRD6O60522 2096 aaKnown RBP12.68□□□□□ -0.38
VPS54-203ENST00000409558 SSX4O60224 188 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 H1F0P07305 194 aaKnown RBP12.68□□□□□ -0.38
VPS54-203ENST00000409558 IL1RNP18510 177 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 UQCRC2P22695 453 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 OPRD1P41143 372 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 ZNF630Q2M218 657 aaPredicted RBP12.68□□□□□ -0.38
VPS54-203ENST00000409558 OR2G6Q5TZ20 316 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 TCTN3Q6NUS6 607 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 VRK2Q86Y07 508 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 OR6T1Q8NGN1 323 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 RGMAQ96B86 450 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 EPYCQ99645 322 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 CRISPLD2Q9H0B8 497 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 MYNNQ9NPC7 610 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 ATP6V1HQ9UI12 483 aa12.68□□□□□ -0.38
VPS54-203ENST00000409558 C4orf51C9J302 202 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 HMGN4O00479 90 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 DNAJB6O75190 326 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 SSTR4P31391 388 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 BCL6P41182 706 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 PIK3CBP42338 1070 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 INAVAQ3KP66 663 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 CRB2Q5IJ48 1285 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 PIP5KL1Q5T9C9 394 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 FAM43BQ6ZT52 329 aaPredicted RBP12.67□□□□□ -0.38
VPS54-203ENST00000409558 NLRP8Q86W28 1048 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 ETFBKMTQ8IXQ9 262 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 CYP4Z2PQ8N1L4 340 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 RHOXF1Q8NHV9 184 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 UBE2E3Q969T4 207 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 PBX4Q9BYU1 374 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 CHST8Q9H2A9 424 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 ADAP2Q9NPF8 381 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms