RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SQSTM1Q13501 440 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 SCARB2Q14108 478 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 GRM7Q14831 915 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 GRAMD1BQ3KR37 738 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 TMEM71Q6P5X7 295 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 IZUMO2Q6UXV1 221 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 CEACAM20Q6UY09 585 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 KMT5CQ86Y97 462 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 ADCY4Q8NFM4 1077 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 OR10Q1Q8NGQ4 319 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 OR1L3Q8NH93 324 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 IFI44Q8TCB0 444 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 NAT6Q93015 286 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 TBC1D20Q96BZ9 403 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 CHID1Q9BWS9 393 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 KLHL4Q9C0H6 718 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 SYNDIG1Q9H7V2 258 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 ENAMQ9NRM1 1142 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 FRYLO94915 3013 aa13.22□□□□□ -0.29
GPNMB-203ENST00000409458 MYOCOSA0A1B0GUC4 107 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 GCM2O75603 506 aaPredicted RBP13.21□□□□□ -0.29
GPNMB-203ENST00000409458 OR2B3O76000 313 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 ZNF682O95780 498 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 CAPNS1P04632 268 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 FHP07954 510 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 RAP2AP10114 183 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 CKMT1AP12532 417 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 CPMP14384 443 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 FASP25445 335 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 PRIM2P49643 509 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 SKP1P63208 163 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 CHRNB3Q05901 458 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 SYT16Q17RD7 645 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 FAM98BQ52LJ0 330 aaKnown RBP13.21□□□□□ -0.29
GPNMB-203ENST00000409458 SFT2D3Q587I9 215 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 PRR23CQ6ZRP0 262 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 SAMD14Q8IZD0 417 aaPredicted RBP13.21□□□□□ -0.29
GPNMB-203ENST00000409458 EID3Q8N140 333 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 KAT2AQ92830 837 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 COL26A1Q96A83 441 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 ELP4Q96EB1 424 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 MMABQ96EY8 250 aaPredicted RBP13.21□□□□□ -0.29
GPNMB-203ENST00000409458 LOXL4Q96JB6 756 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 UGT2B28Q9BY64 529 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 LRRN3Q9H3W5 708 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 ANKRA2Q9H9E1 313 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 C11orf16Q9NQ32 467 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 CUTCQ9NTM9 273 aa13.21□□□□□ -0.29
GPNMB-203ENST00000409458 SAMD4AQ9UPU9 718 aaKnown RBP13.21□□□□□ -0.29
GPNMB-203ENST00000409458 TMEM184BQ9Y519 407 aaPredicted RBP13.21□□□□□ -0.29
GPNMB-203ENST00000409458 HMGN4O00479 90 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 KHNYNO15037 678 aaKnown RBP13.21□□□□□ -0.3
GPNMB-203ENST00000409458 GALR2O43603 387 aaPredicted RBP13.21□□□□□ -0.3
GPNMB-203ENST00000409458 CPNE6O95741 557 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 FCGR1AP12314 374 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 RNH1P13489 461 aaKnown RBP13.21□□□□□ -0.3
GPNMB-203ENST00000409458 AVPR1BP47901 424 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 PRKAG1P54619 331 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 EMP3P54852 163 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 MRPS35P82673 323 aaKnown RBP13.21□□□□□ -0.3
GPNMB-203ENST00000409458 DAB2P98082 770 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 CDK6Q00534 326 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 ATP6AP1Q15904 470 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 ZNF630Q2M218 657 aaPredicted RBP13.21□□□□□ -0.3
GPNMB-203ENST00000409458 TMTC4Q5T4D3 741 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 PRAMEF17Q5VTA0 474 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 NIPAL1Q6NVV3 410 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 CBLL1Q75N03 491 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 ZC3H7AQ8IWR0 971 aaKnown RBP13.21□□□□□ -0.3
GPNMB-203ENST00000409458 ANKFN1Q8N957 763 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 OR7G2Q8NG99 324 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 OR56A1Q8NGH5 318 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 OR5D16Q8NGK9 328 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 DNAJC9Q8WXX5 260 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 TANKQ92844 425 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 RAB8BQ92930 207 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 ANKRD9Q96BM1 317 aaPredicted RBP13.21□□□□□ -0.3
GPNMB-203ENST00000409458 MOAP1Q96BY2 351 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 PEX11GQ96HA9 241 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 PYURFQ96I23 114 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 VCX3BQ9H321 246 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 OR51I1Q9H343 314 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 MAGIXQ9H6Y5 334 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 A4GALTQ9NPC4 353 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 DNAAF2Q9NVR5 837 aaKnown RBP13.21□□□□□ -0.3
GPNMB-203ENST00000409458 DTNAQ9Y4J8 743 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 PCDHGA5Q9Y5G8 931 aa13.21□□□□□ -0.3
GPNMB-203ENST00000409458 TOX3O15405 576 aaPredicted RBP13.2□□□□□ -0.3
GPNMB-203ENST00000409458 EMC8O43402 210 aa13.2□□□□□ -0.3
GPNMB-203ENST00000409458 PEX1O43933 1283 aa13.2□□□□□ -0.3
GPNMB-203ENST00000409458 GPR75O95800 540 aa13.2□□□□□ -0.3
GPNMB-203ENST00000409458 ANKRD34CP0C6C1 535 aa13.2□□□□□ -0.3
GPNMB-203ENST00000409458 MSL3P1P0C860 447 aa13.2□□□□□ -0.3
GPNMB-203ENST00000409458 PORP16435 677 aaPredicted RBP13.2□□□□□ -0.3
GPNMB-203ENST00000409458 SOX18P35713 384 aa13.2□□□□□ -0.3
GPNMB-203ENST00000409458 GCGRP47871 477 aa13.2□□□□□ -0.3
GPNMB-203ENST00000409458 KHKP50053 298 aa13.2□□□□□ -0.3
GPNMB-203ENST00000409458 AQP4P55087 323 aa13.2□□□□□ -0.3
GPNMB-203ENST00000409458 LASP1Q14847 261 aaKnown RBP13.2□□□□□ -0.3
GPNMB-203ENST00000409458 ZNF628Q5EBL2 1059 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms