RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 STK32CQ86UX6 486 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 SPPL2CQ8IUH8 684 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 SLC22A18ASQ8N1D0 253 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CHPT1Q8WUD6 406 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 TRUB1Q8WWH5 349 aaKnown RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 STARD8Q92502 1023 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CIDECQ96AQ7 238 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CENPNQ96H22 339 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 COL21A1Q96P44 957 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 COL25A1Q9BXS0 654 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 ALOXE3Q9BYJ1 711 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 OR52A5Q9H2C5 316 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 ADNPQ9H2P0 1102 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 RAD21L1Q9H4I0 556 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 C8orf4Q9NR00 106 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 EXD2Q9NVH0 621 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 ENTPD2Q9Y5L3 495 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 DNMT3AQ9Y6K1 912 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CASC3O15234 703 aaKnown RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 LCMT2O60294 686 aaKnown RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CDC40O60508 579 aaKnown RBP eCLIP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 KCNJ13O60928 360 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CSO75390 466 aaKnown RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 KRT75O95678 551 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 LAMP1P11279 417 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 GLB1P16278 677 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 PRPS1L1P21108 318 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 RPL3P39023 403 aaKnown RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CAPGP40121 348 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 PLGLB1Q02325 96 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CHAF1BQ13112 559 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 GTDC1Q4AE62 458 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 OR4C11Q6IEV9 310 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 VN1R5Q7Z5H4 357 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 SPATA19Q7Z5L4 167 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 MAGEE2Q8TD90 523 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 TAMM41Q96BW9 452 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 LPAR4Q99677 370 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 TBL1XR1Q9BZK7 514 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 LRRN3Q9H3W5 708 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 ARNTLO00327 626 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 CHST10O43529 356 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 PCDHGA12O60330 932 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 DIRAS1O95057 198 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 CCL4P13236 92 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 DCKP27707 260 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 TRIM23P36406 574 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 INTS11Q5TA45 600 aaKnown RBP9.76□□□□□ -0.85
COL6A3-205ENST00000392004 HMBOX1Q6NT76 420 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 UBQLNLQ8IYU4 475 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 SLC35G5Q96KT7 338 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 NRSN2Q9GZP1 204 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 KLHL31Q9H511 634 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF385DQ9H6B1 395 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF304Q9HCX3 659 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 MED12Q93074 2177 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 AQP12BA6NM10 295 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 TAPBPO15533 448 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 ALOX12BO75342 701 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 CLIC3O95833 236 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 POU2F1P14859 743 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 CBLP22681 906 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 PFN3P60673 137 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 EXOSC7Q15024 291 aaKnown RBP9.76□□□□□ -0.85
COL6A3-205ENST00000392004 C18orf63Q68DL7 685 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 FRMPD2BQ6IN97 320 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 NANOGP8Q6NSW7 305 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 CEACAM20Q6UY09 585 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 SLC29A4Q7RTT9 530 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 AQP12AQ8IXF9 295 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 SLC15A4Q8N697 577 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 STON2Q8WXE9 905 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 FBXL20Q96IG2 436 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 DPH2Q9BQC3 489 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-205ENST00000392004 YTHDF1Q9BYJ9 559 aaKnown RBP9.76□□□□□ -0.85
COL6A3-205ENST00000392004 ACPTQ9BZG2 426 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 SMPD3Q9NY59 655 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-205ENST00000392004 SPATA7Q9P0W8 599 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 PADI1Q9ULC6 663 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 PCDHGA2Q9Y5H1 932 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 LNP1A1A4G5 178 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 CLIC1O00299 241 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 WWP2O00308 870 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 BCHEP06276 602 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 TIA1P31483 386 aaKnown RBP eCLIP9.76□□□□□ -0.85
COL6A3-205ENST00000392004 GABRA3P34903 492 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 NFATC3Q12968 1075 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 BNIP2Q12982 314 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF846Q147U1 533 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 PERM1Q5SV97 790 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 STPG1Q5TH74 334 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 BROXQ5VW32 411 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 RNF130Q86XS8 419 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 GALNT6Q8NCL4 622 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 SLCO4A1Q96BD0 722 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 ARSGQ96EG1 525 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 CCDC74BQ96LY2 380 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 LRFN3Q9BTN0 628 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 HMG20AQ9NP66 347 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 CCM2LQ9NUG4 571 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms