RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 EPOP01588 193 aa12.27□□□□□ -0.45
CCDC88C-204ENST00000389857 UBE2NP61088 152 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-204ENST00000389857 CCL14Q16627 93 aa12.27□□□□□ -0.45
CCDC88C-204ENST00000389857 TBRG1Q3YBR2 411 aa12.27□□□□□ -0.45
CCDC88C-204ENST00000389857 GSG1LQ6UXU4 331 aa12.27□□□□□ -0.45
CCDC88C-204ENST00000389857 PXKQ7Z7A4 578 aa12.27□□□□□ -0.45
CCDC88C-204ENST00000389857 OR10Q1Q8NGQ4 319 aa12.27□□□□□ -0.45
CCDC88C-204ENST00000389857 WDR92Q96MX6 357 aa12.27□□□□□ -0.45
CCDC88C-204ENST00000389857 RNF38Q9H0F5 515 aa12.27□□□□□ -0.45
CCDC88C-204ENST00000389857 CYP8B1Q9UNU6 501 aa12.27□□□□□ -0.45
CCDC88C-204ENST00000389857 TRBV2A0A0J9YWF9 115 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 AAK1Q2M2I8 961 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 TMPRSS12Q86WS5 348 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 IL17RCQ8NAC3 791 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 GATSQ8NAP1 163 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 RAB8BQ92930 207 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 BEX2Q9BXY8 128 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 ZNF442Q9H7R0 627 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 BEX1Q9HBH7 125 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 HIF3AQ9Y2N7 669 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 MEN1O00255 615 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 HLA-EP13747 358 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 ZNF182P17025 639 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 CAPN3P20807 821 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 LIPKQ5VXJ0 399 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 ZC3H14Q6PJT7 736 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 DPY19L3Q6ZPD9 716 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 ELMOD2Q8IZ81 293 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 IL22RA1Q8N6P7 574 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 WDSUB1Q8N9V3 476 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 OR4K1Q8NGD4 311 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 MEAF6Q9HAF1 191 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 MGAT4CQ9UBM8 478 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 SMIM30A4D0T7 59 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 SLC22A31A6NKX4 558 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 IFNA10P01566 189 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 RHCEP18577 417 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 PRKACGP22612 351 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 AK4P27144 223 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 GPR17Q13304 367 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 DCAF12L1Q5VU92 463 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 SLC18B1Q6NT16 456 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 UBQLNLQ8IYU4 475 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 SLC25A44Q96H78 314 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 C2orf42Q9NWW7 574 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 MAFKO60675 156 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 RASAL1O95294 804 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 RAB11BQ15907 218 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 DUS1LQ6P1R4 473 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 MTFR2Q6P444 385 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 TMEM205Q6UW68 189 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 SGTBQ96EQ0 304 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 UNKLQ9H9P5 680 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 ABRACLQ9P1F3 81 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 MYH11P35749 1972 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 ANKRD28O15084 1053 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 CDC123O75794 336 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 ADORA3P0DMS8 318 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 HK3P52790 923 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 C6orf120Q7Z4R8 191 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 BOLLQ8N9W6 283 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 RCBTB1Q8NDN9 531 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 OR14K1Q8NGZ2 314 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 PHOX2BQ99453 314 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 PITX2Q99697 317 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 IL21RQ9HBE5 538 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 GHRLQ9UBU3 117 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 ACSL6Q9UKU0 697 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 TCHHQ07283 1943 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 NFAT5O94916 1531 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 ACTL6BO94805 426 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 TIA1P31483 386 aaKnown RBP eCLIP12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 ARSFP54793 590 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 OGDHQ02218 1023 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 EXOC3L2Q2M3D2 409 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 ZFAND4Q86XD8 727 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 Q8N402 240 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 CLDN19Q8N6F1 224 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 TRMT10AQ8TBZ6 339 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 STUB1Q9UNE7 303 aa12.26□□□□□ -0.45
CCDC88C-204ENST00000389857 MDFIC2A0A1B0GVS7 189 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 TVP23AA6NH52 213 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 SOBPA7XYQ1 873 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 SOCS2O14508 198 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 LRRTM2O43300 516 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 UCHL1P09936 223 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 RNH1P13489 461 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 PTNP21246 168 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 GARNL3Q5VVW2 1013 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 CDCA2Q69YH5 1023 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 BEST3Q8N1M1 668 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 CCDC71LQ8N9Z2 235 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 ZNF461Q8TAF7 563 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 C22orf15Q8WYQ4 148 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 MAELQ96JY0 434 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 C7orf34Q96L11 122 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 TSNAXQ99598 290 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 PAK1IP1Q9NWT1 392 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 MTMR11A4FU01 709 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 DNAJB6O75190 326 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms