RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 WDR74Q6RFH5 385 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 GPR141Q7Z602 305 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 FAM181AQ8N9Y4 354 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 C11orf65Q8NCR3 313 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 PSMA8Q8TAA3 256 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 NMD3Q96D46 503 aaKnown RBP17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 LOXL4Q96JB6 756 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 DPYSL5Q9BPU6 564 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 TUBA1CQ9BQE3 449 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 SYNPO2LQ9H987 977 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 CAPN10Q9HC96 672 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 IRAK4Q9NWZ3 460 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 THUMPD1Q9NXG2 353 aaKnown RBP17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 DAPP1Q9UN19 280 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 SNX8Q9Y5X2 465 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 V9GYQ6 96 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 MN1Q10571 1320 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 MYOCOSA0A1B0GUC4 107 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 BLACEA4D250 179 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 GNGT2O14610 69 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 SH3BP5O60239 455 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 GALR3O60755 368 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 SNAP29O95721 258 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 GIMD1P0DJR0 217 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 PRIM2P49643 509 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 HLCSP50747 726 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 NCBP2P52298 156 aaKnown RBP eCLIP17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 EMP3P54852 163 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 HSD11B2P80365 405 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 IL18R1Q13478 541 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 RBM48Q5RL73 367 aaKnown RBP17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 ENPP6Q6UWR7 440 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 KANSL1Q7Z3B3 1105 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 STK32CQ86UX6 486 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 MMP21Q8N119 569 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 TTC29Q8NA56 475 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 DTNBP1Q96EV8 351 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 MAPKAP1Q9BPZ7 522 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 DPH2Q9BQC3 489 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 FAM60AQ9NP50 221 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 TIMMDC1Q9NPL8 285 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 FAF1Q9UNN5 650 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 MYO1GB0I1T2 1018 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 ARHGAP33O14559 1287 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 TOX3O15405 576 aaPredicted RBP17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 ERAL1O75616 437 aaKnown RBP17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 KCNK5O95279 499 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 C9P02748 559 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 NTRK1P04629 796 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 AVPR2P30518 371 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 SOX11P35716 441 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 CRATP43155 626 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 DUSP3P51452 185 aaPredicted RBP17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 LIM2P55344 173 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 GFERP55789 205 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 PPP2R2BQ00005 443 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 HSPB3Q12988 150 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 TOP3AQ13472 1001 aaPredicted RBP17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 TRIM61Q5EBN2 209 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 GCNT6Q5T4J0 391 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 TMEM64Q6YI46 380 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 GPR155Q7Z3F1 870 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 PRSS42Q7Z5A4 293 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 ERI1Q8IV48 349 aaKnown RBP17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 ZNF555Q8NEP9 628 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 ZNF420Q8TAQ5 688 aaPredicted RBP17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 SFXN5Q8TD22 340 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 NEURL3Q96EH8 262 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 AMDHD1Q96NU7 426 aa17.17■□□□□ 0.34
CCDC88C-203ENST00000389856 PI4KAP42356 2102 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 EME2A4GXA9 379 aaPredicted RBP17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 TMEM247A6NEH6 219 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 DPM1O60762 260 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 PRAMEF10O60809 474 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 SERPINA1P01009 418 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 MT-ND1P03886 318 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 PPP2R1BP30154 601 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 PCGF2P35227 344 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 RAD23AP54725 363 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 FAM53BQ14153 422 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 GRM7Q14831 915 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 ANGPT1Q15389 498 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 PRTGQ2VWP7 1150 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 INAVAQ3KP66 663 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 AMZ1Q400G9 498 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 OTUD3Q5T2D3 398 aaPredicted RBP17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 TBPL2Q6SJ96 375 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 THAP5Q7Z6K1 395 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 ZZZ3Q8IYH5 903 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 Q8N9G6 341 aaPredicted RBP17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 OR4K14Q8NGD5 310 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 CCDC74AQ96AQ1 378 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 FBXL20Q96IG2 436 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 MPP4Q96JB8 637 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 ZNF285Q96NJ3 590 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 GABARAPL1Q9H0R8 117 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 C3orf18Q9UK00 162 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 RAB23Q9ULC3 237 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 CLCA2Q9UQC9 943 aa17.16■□□□□ 0.34
CCDC88C-203ENST00000389856 MRPS33Q9Y291 106 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms