RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 PCDHGB1Q9Y5G3 927 aa14.73□□□□□ -0.05
CCDC40-202ENST00000374876 SPEGQ15772 3267 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 ARID1BQ8NFD5 2236 aaPredicted RBP14.72□□□□□ -0.05
CCDC40-202ENST00000374876 DCDC2BA2VCK2 349 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 TNFRSF1BP20333 461 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 CXCR2P25025 360 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 AK4P27144 223 aaPredicted RBP14.72□□□□□ -0.05
CCDC40-202ENST00000374876 HSD17B2P37059 387 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 GP2P55259 537 aaKnown RBP14.72□□□□□ -0.05
CCDC40-202ENST00000374876 SLC35A2P78381 396 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 CDK6Q00534 326 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 ZNF630Q2M218 657 aaPredicted RBP14.72□□□□□ -0.05
CCDC40-202ENST00000374876 NAXDQ8IW45 347 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 ZNF540Q8NDQ6 660 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 B4GALNT2Q8NHY0 566 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 GIPC3Q8TF64 312 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 RORBQ92753 470 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 SCARF2Q96GP6 870 aaPredicted RBP14.72□□□□□ -0.05
CCDC40-202ENST00000374876 CSF3RQ99062 836 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 DUSP21Q9H596 190 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 PCDHGB2Q9Y5G2 931 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 DCHS1Q96JQ0 3298 aa14.72□□□□□ -0.05
CCDC40-202ENST00000374876 FAM20BO75063 409 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 IFNA14P01570 189 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 ITGA2P17301 1181 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 TPP2P29144 1249 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-202ENST00000374876 CYP4F2P78329 520 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 PRSS53Q2L4Q9 553 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 KHDRBS2Q5VWX1 349 aaKnown RBP14.71□□□□□ -0.05
CCDC40-202ENST00000374876 METRNLQ641Q3 311 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 CCDC80Q76M96 950 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 TAF8Q7Z7C8 310 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 MMP21Q8N119 569 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 DEFB124Q8NES8 71 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 FAR1Q8WVX9 515 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 TAMM41Q96BW9 452 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 PITX2Q99697 317 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 RHBGQ9H310 441 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 PELI2Q9HAT8 420 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 RASSF1Q9NS23 344 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 TAAR2Q9P1P5 351 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 ENPP5Q9UJA9 477 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 SNX8Q9Y5X2 465 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 LYVE1Q9Y5Y7 322 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 A0A0J9YVX5 310 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 PLPP1O14494 284 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 FLRT2O43155 660 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 SEMA3DO95025 777 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 SLC35G4P0C7Q5 338 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 ERGP11308 486 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 MYF5P13349 255 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 OR1E2P47887 323 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 CCR8P51685 355 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 MAPK12P53778 367 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 SPIBQ01892 262 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 ELOCQ15369 112 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 PROX2Q3B8N5 592 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 PAGE2Q7Z2X7 111 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 TSEN54Q7Z6J9 526 aaKnown RBP14.71□□□□□ -0.05
CCDC40-202ENST00000374876 PIP4P1Q86T03 277 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 NRROSQ86YC3 692 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 FKBP10Q96AY3 582 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 NRTNQ99748 197 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 TMEM121BQ9BXQ6 578 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-202ENST00000374876 GABARAPL3Q9BY60 117 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 NLNQ9BYT8 704 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 PCBD2Q9H0N5 130 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 CCNB1IP1Q9NPC3 277 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 PCOLCE2Q9UKZ9 415 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 DOLKQ9UPQ8 538 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 ANGPT4Q9Y264 503 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 PCDHGA10Q9Y5H3 936 aa14.71□□□□□ -0.05
CCDC40-202ENST00000374876 DNMT3AQ9Y6K1 912 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-202ENST00000374876 hCG_2014768A0A024R1R8 64 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 ANKRD33BA6NCL7 494 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 KMOO15229 486 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 RGS10O43665 173 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 SIGLEC6O43699 453 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 DDCP20711 480 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 UQCRC2P22695 453 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 GRK6P43250 576 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 EEF1A2Q05639 463 aaKnown RBP14.7□□□□□ -0.06
CCDC40-202ENST00000374876 SMN1Q16637 294 aaKnown RBP14.7□□□□□ -0.06
CCDC40-202ENST00000374876 MOGQ16653 247 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 ZNF829Q3KNS6 432 aaPredicted RBP14.7□□□□□ -0.06
CCDC40-202ENST00000374876 DEPDC1Q5TB30 811 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 KLHL35Q6PF15 583 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 ANKRD13BQ86YJ7 626 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 SFTPA2Q8IWL1 248 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 OR10G2Q8NGC3 310 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 MIPOL1Q8TD10 442 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 SMPDL3AQ92484 453 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 TANKQ92844 425 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 OR2M4Q96R27 311 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 ZNF300Q96RE9 604 aaPredicted RBP14.7□□□□□ -0.06
CCDC40-202ENST00000374876 F2RL3Q96RI0 385 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 FEVQ99581 238 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 THSD1Q9NS62 852 aa14.7□□□□□ -0.06
CCDC40-202ENST00000374876 CUEDC1Q9NWM3 386 aaPredicted RBP14.7□□□□□ -0.06
CCDC40-202ENST00000374876 ICKQ9UPZ9 632 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms