RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ITIH1P19827 911 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 COL5A1P20908 1838 aaPredicted RBP13.54□□□□□ -0.24
HMGA1-203ENST00000374116 SERPINB1P30740 379 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 RAD23AP54725 363 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 WNT3P56703 355 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 SIM1P81133 766 aaPredicted RBP13.54□□□□□ -0.24
HMGA1-203ENST00000374116 KIR2DS5Q14953 304 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 SPIN4Q56A73 249 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 TTC23Q5W5X9 447 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 CAPN13Q6MZZ7 669 aaPredicted RBP13.54□□□□□ -0.24
HMGA1-203ENST00000374116 ERICH5Q6P6B1 374 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 SLC9B2Q86UD5 537 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 SLCO6A1Q86UG4 719 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 OFCC1Q8IZS5 231 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 C10orf111Q8N326 155 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 C2orf73Q8N5S3 287 aaPredicted RBP13.54□□□□□ -0.24
HMGA1-203ENST00000374116 OR7G3Q8NG95 312 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 OR9A1PQ8NGU1 263 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 OR5K1Q8NHB7 308 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 PHF10Q8WUB8 498 aaKnown RBP13.54□□□□□ -0.24
HMGA1-203ENST00000374116 MED30Q96HR3 178 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 RBM4BQ9BQ04 359 aaKnown RBP13.54□□□□□ -0.24
HMGA1-203ENST00000374116 CCDC3Q9BQI4 270 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 RBM4Q9BWF3 364 aaKnown RBP13.54□□□□□ -0.24
HMGA1-203ENST00000374116 XKR8Q9H6D3 395 aa13.54□□□□□ -0.24
HMGA1-203ENST00000374116 CRNNQ9UBG3 495 aaPredicted RBP13.54□□□□□ -0.24
HMGA1-203ENST00000374116 SAMD4AQ9UPU9 718 aaKnown RBP13.54□□□□□ -0.24
HMGA1-203ENST00000374116 MAGEB17A8MXT2 336 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 TNFSF14O43557 240 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 DYRK3O43781 588 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 GABARAPO95166 117 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 B3GALT4O96024 378 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 GLB1P16278 677 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 TYRP1P17643 537 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 GPX2P18283 190 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 GRK3P35626 688 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 TAP2Q03519 686 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 MED27Q6P2C8 311 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 UNC5DQ6UXZ4 953 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 USP53Q70EK8 1073 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 LSM14AQ8ND56 463 aaKnown RBP13.53□□□□□ -0.24
HMGA1-203ENST00000374116 OR6Q1Q8NGQ2 317 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 CHTF18Q8WVB6 975 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 HDAC2Q92769 488 aaKnown RBP13.53□□□□□ -0.24
HMGA1-203ENST00000374116 NEIL2Q969S2 332 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 TP53INP1Q96A56 240 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 SLC38A3Q99624 504 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 BTNL2Q9UIR0 455 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 ATXN7L1Q9ULK2 861 aaPredicted RBP13.53□□□□□ -0.24
HMGA1-203ENST00000374116 UGT2A1Q9Y4X1 527 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 OR5K4A6NMS3 321 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 SCAMP2O15127 329 aaKnown RBP13.53□□□□□ -0.24
HMGA1-203ENST00000374116 B4GAT1O43505 415 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 NUDT21O43809 227 aaKnown RBP13.53□□□□□ -0.24
HMGA1-203ENST00000374116 KCNK5O95279 499 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 CD40LGP29965 261 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 FASLGP48023 281 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 SERPINB10P48595 397 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 TBPL1P62380 186 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 RAE1P78406 368 aaKnown RBP13.53□□□□□ -0.24
HMGA1-203ENST00000374116 PPP2R2BQ00005 443 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 VAC14Q08AM6 782 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 LRRC74AQ0VAA2 488 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 PLCL1Q15111 1095 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 CTF1Q16619 201 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 ZIK1Q3SY52 487 aaPredicted RBP13.53□□□□□ -0.24
HMGA1-203ENST00000374116 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.53□□□□□ -0.24
HMGA1-203ENST00000374116 ANXA8L1Q5VT79 327 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 CPZQ66K79 652 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 ZNF621Q6ZSS3 439 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 USP43Q70EL4 1123 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 CAMKMTQ7Z624 323 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 SYTL1Q8IYJ3 562 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 C1orf52Q8N6N3 182 aaKnown RBP13.53□□□□□ -0.24
HMGA1-203ENST00000374116 VPS37AQ8NEZ2 397 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 BPIFB6Q8NFQ5 453 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 OR4E2Q8NGC2 313 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 HUS1BQ8NHY5 278 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 TBC1D20Q96BZ9 403 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 MUS81Q96NY9 551 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 IL17FQ96PD4 163 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 DUSP26Q9BV47 211 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 FUNDC2Q9BWH2 189 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 SPATA9Q9BWV2 254 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 OR2B2Q9GZK3 357 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 SOX17Q9H6I2 414 aaPredicted RBP13.53□□□□□ -0.24
HMGA1-203ENST00000374116 DYRK1BQ9Y463 629 aa13.53□□□□□ -0.24
HMGA1-203ENST00000374116 MAGED1Q9Y5V3 778 aaPredicted RBP13.53□□□□□ -0.24
HMGA1-203ENST00000374116 FOXE1O00358 373 aaPredicted RBP13.52□□□□□ -0.25
HMGA1-203ENST00000374116 ETHE1O95571 254 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 ANXA4P09525 319 aaPredicted RBP13.52□□□□□ -0.25
HMGA1-203ENST00000374116 ERGP11308 486 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 PPIBP23284 216 aaKnown RBP13.52□□□□□ -0.25
HMGA1-203ENST00000374116 CRHBPP24387 322 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 ACP1P24666 158 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 MAGEA2P43356 314 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 PPP1CAP62136 330 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 CCL7P80098 99 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 VMACQ2NL98 169 aa13.52□□□□□ -0.25
HMGA1-203ENST00000374116 PAGE2BQ5JRK9 111 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms