RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 GRK7Q8WTQ7 553 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 ZFP3Q96NJ6 502 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 SECISBP2Q96T21 854 aaKnown RBP12.68□□□□□ -0.38
VPS29-201ENST00000360579 PELOQ9BRX2 385 aaKnown RBP12.68□□□□□ -0.38
VPS29-201ENST00000360579 WDR83Q9BRX9 315 aaKnown RBP12.68□□□□□ -0.38
VPS29-201ENST00000360579 SFXN3Q9BWM7 321 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 PRM3Q9NNZ6 103 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 DNAJC11Q9NVH1 559 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 MS4A12Q9NXJ0 267 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 NDRG3Q9UGV2 375 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 ZNF490Q9ULM2 529 aaPredicted RBP12.68□□□□□ -0.38
VPS29-201ENST00000360579 EML6Q6ZMW3 1958 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 TMIGD3P0DMS9 266 aaPredicted RBP12.67□□□□□ -0.38
VPS29-201ENST00000360579 TLX1P31314 330 aaPredicted RBP12.67□□□□□ -0.38
VPS29-201ENST00000360579 GCKP35557 465 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 GGT5P36269 586 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 MASP1P48740 699 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 TMED10P49755 219 aaKnown RBP12.67□□□□□ -0.38
VPS29-201ENST00000360579 AGFG1P52594 562 aaKnown RBP12.67□□□□□ -0.38
VPS29-201ENST00000360579 RPP38P78345 283 aaKnown RBP12.67□□□□□ -0.38
VPS29-201ENST00000360579 RPS6KA2Q15349 733 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 TSNQ15631 228 aaKnown RBP12.67□□□□□ -0.38
VPS29-201ENST00000360579 CYP1B1Q16678 543 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 ZNF793Q6ZN11 406 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 RNF111Q6ZNA4 994 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 ZNF662Q6ZS27 426 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 ST13P4Q8IZP2 240 aaPredicted RBP12.67□□□□□ -0.38
VPS29-201ENST00000360579 ZPLD1Q8TCW7 415 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 TANKQ92844 425 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 UBE2E3Q969T4 207 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 WDR34Q96EX3 536 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 VPS39Q96JC1 886 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 KRT12Q99456 494 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 NAP1L3Q99457 506 aaPredicted RBP12.67□□□□□ -0.38
VPS29-201ENST00000360579 PHACTR1Q9C0D0 580 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 WWTR1Q9GZV5 400 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 UBQLN3Q9H347 655 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 ACBD3Q9H3P7 528 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 RPF2Q9H7B2 306 aaKnown RBP12.67□□□□□ -0.38
VPS29-201ENST00000360579 LZTFL1Q9NQ48 299 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 WWOXQ9NZC7 414 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 SLC17A6Q9P2U8 582 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 TLN2Q9Y4G6 2542 aa12.67□□□□□ -0.38
VPS29-201ENST00000360579 A0A1W2PPR1 153 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 NCF1BA6NI72 391 aaPredicted RBP12.66□□□□□ -0.38
VPS29-201ENST00000360579 NCF1CA8MVU1 366 aaPredicted RBP12.66□□□□□ -0.38
VPS29-201ENST00000360579 GOLGA6L6A8MZA4 724 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 CDH16O75309 829 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 ACSL3O95573 720 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 CYP4B1P13584 511 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 NCF1P14598 390 aaPredicted RBP12.66□□□□□ -0.38
VPS29-201ENST00000360579 ALOX15P16050 662 aaPredicted RBP12.66□□□□□ -0.38
VPS29-201ENST00000360579 BMP7P18075 431 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 FPR1P21462 350 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 SERPINB1P30740 379 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 SSR2P43308 183 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 EEF1A1P68104 462 aaKnown RBP12.66□□□□□ -0.38
VPS29-201ENST00000360579 DOC2AQ14183 400 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 EBPQ15125 230 aaKnown RBP12.66□□□□□ -0.38
VPS29-201ENST00000360579 TGFBIQ15582 683 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 SPRED3Q2MJR0 410 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 C18orf21Q32NC0 220 aaPredicted RBP12.66□□□□□ -0.38
VPS29-201ENST00000360579 CDKL4Q5MAI5 379 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 EEF1A1P5Q5VTE0 462 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 ADNP2Q6IQ32 1131 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 SCIMPQ6UWF3 145 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 UBE3DQ7Z6J8 389 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 OR4N5Q8IXE1 308 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 SNX31Q8N9S9 440 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 ABTB1Q969K4 478 aaPredicted RBP12.66□□□□□ -0.38
VPS29-201ENST00000360579 PPWD1Q96BP3 646 aaKnown RBP12.66□□□□□ -0.38
VPS29-201ENST00000360579 WDYHV1Q96HA8 205 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 Q96MF0 132 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 RILPQ96NA2 401 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 TM9SF2Q99805 663 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 MS4A8Q9BY19 250 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 UGT2B28Q9BY64 529 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 PIGMQ9H3S5 423 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 GALNT8Q9NY28 637 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 C15orf41Q9Y2V0 281 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 SLC6A5Q9Y345 797 aa12.66□□□□□ -0.38
VPS29-201ENST00000360579 HRKO00198 91 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 OR10H2O60403 315 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 STK16O75716 305 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 LRATO95237 230 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 ACTL6AO96019 429 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 FNTAP49354 379 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 DIO3P55073 304 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 SLC37A1P57057 533 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 HERVK_113P63132 956 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 ERVK-8P63133 956 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 ILF2Q12905 390 aaKnown RBP12.65□□□□□ -0.38
VPS29-201ENST00000360579 TOMM20Q15388 145 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 PPP1R7Q15435 360 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 TBCCQ15814 346 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 PDK4Q16654 411 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 YTHDF3Q7Z739 585 aaKnown RBP12.65□□□□□ -0.38
VPS29-201ENST00000360579 LUZP2Q86TE4 346 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 CIARTQ8N365 385 aaPredicted RBP12.65□□□□□ -0.38
VPS29-201ENST00000360579 VWA5B2Q8N398 1253 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms