RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 AHSPQ9NZD4 102 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PACSIN3Q9UKS6 424 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 TRIM33Q9UPN9 1127 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 USP22Q9UPT9 525 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 TMED5Q9Y3A6 229 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 KCNE3Q9Y6H6 103 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SPACA6W5XKT8 324 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CRYBG3Q68DQ2 2970 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PRAMEF27A3QJZ7 478 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CDC14CA4D256 554 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 ERICH4A6NGS2 130 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 C17orf51A8MQB3 221 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 MYO1GB0I1T2 1018 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 UPK1AO00322 258 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 NDUFAB1O14561 156 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 DDAH2O95865 285 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 C6orf47O95873 294 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 ABCB1P08183 1280 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 COX6A1P12074 109 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CPMP14384 443 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 HOXB9P17482 250 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 AGXTP21549 392 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 JAK1P23458 1154 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PIK3R1P27986 724 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 OTX2P32243 289 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 FRKP42685 505 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 ARFIP1P53367 373 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 EMP2P54851 167 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 RPS26P62854 115 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 IGLV3-21P80748 117 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 TLE3Q04726 772 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 EEF1A2Q05639 463 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 HSPB3Q12988 150 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 RCAN2Q14206 197 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SELPLGQ14242 412 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PCOLCEQ15113 449 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PRICKLE4Q2TBC4 344 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CPZQ66K79 652 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 FCRLBQ6BAA4 426 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 TMEM205Q6UW68 189 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 DLEU7Q6UYE1 221 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 DNAJC14Q6Y2X3 702 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 ACAD11Q709F0 780 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 MED25Q71SY5 747 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PAGE2Q7Z2X7 111 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SPATA19Q7Z5L4 167 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 GALNT10Q86SR1 603 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SPACA3Q8IXA5 215 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PLPP5Q8NEB5 264 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 THAP3Q8WTV1 239 aaPredicted RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 SLC39A7Q92504 469 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PSMF1Q92530 271 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 GTF2H4Q92759 462 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 CTHRC1Q96CG8 243 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 C16orf58Q96GQ5 468 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 DPY30Q9C005 99 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 SERHL2Q9H4I8 314 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 IL1RL2Q9HB29 575 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PRTFDC1Q9NRG1 225 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 PNO1Q9NRX1 252 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 ATP6V1HQ9UI12 483 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 EIF3LQ9Y262 564 aaKnown RBP3.76□□□□□ -1.81
LIG4-201ENST00000356922 TENM4Q6N022 2769 aa3.76□□□□□ -1.81
LIG4-201ENST00000356922 C1orf226A1L170 272 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 FXYD1O00168 92 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 CREG1O75629 220 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 CBX7O95931 251 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 ALBP02768 609 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 PRPS2P11908 318 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 COX7A2P14406 83 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 IDO1P14902 403 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 PCSK2P16519 638 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 MC3RP41968 323 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 PGDP52209 483 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 POLR2JP52435 117 aaKnown RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 MVDP53602 400 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 OCA2Q04671 838 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 ATP1A4Q13733 1029 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 CAPRIN1Q14444 709 aaKnown RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 HEPACAMQ14CZ8 416 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 PDCD4Q53EL6 469 aaKnown RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 SFT2D3Q587I9 215 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 FHL5Q5TD97 284 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 YOD1Q5VVQ6 348 aaPredicted RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 TMEM107Q6UX40 140 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 TMEM64Q6YI46 380 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 SZRD1Q7Z422 152 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 MIER2Q8N344 545 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 ESX1Q8N693 406 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 OR4N2Q8NGD1 307 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 OR4K14Q8NGD5 310 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 STARD8Q92502 1023 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 KIAA1143Q96AT1 154 aaPredicted RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 ERP27Q96DN0 273 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 SENP5Q96HI0 755 aaPredicted RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 METTL2AQ96IZ6 378 aaKnown RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 IMMP1LQ96LU5 166 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 ZNF578Q96N58 590 aaPredicted RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 OR1F2PQ96R84 312 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 NSRP1Q9H0G5 558 aaKnown RBP3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms