RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 FGD2Q7Z6J4 655 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 TDRPQ86YL5 185 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 SPPL2CQ8IUH8 684 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 SLC22A9Q8IVM8 553 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 MMP21Q8N119 569 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 ZFP62Q8NB50 900 aaPredicted RBP17.01■□□□□ 0.31
CLN3-202ENST00000355477 POGLUT1Q8NBL1 392 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 C16orf52Q8NHV5 167 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 NUBPLQ8TB37 319 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 EPS8L3Q8TE67 593 aaKnown RBP17.01■□□□□ 0.31
CLN3-202ENST00000355477 GSTO2Q9H4Y5 243 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 TINAGQ9UJW2 476 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 G3V3Y1 287 aa17■□□□□ 0.31
CLN3-202ENST00000355477 DYRK3O43781 588 aa17■□□□□ 0.31
CLN3-202ENST00000355477 NADKO95544 446 aaPredicted RBP17■□□□□ 0.31
CLN3-202ENST00000355477 PROCP04070 461 aa17■□□□□ 0.31
CLN3-202ENST00000355477 PIK3R1P27986 724 aa17■□□□□ 0.31
CLN3-202ENST00000355477 GALNSP34059 522 aa17■□□□□ 0.31
CLN3-202ENST00000355477 PTGER1P34995 402 aa17■□□□□ 0.31
CLN3-202ENST00000355477 HTR6P50406 440 aa17■□□□□ 0.31
CLN3-202ENST00000355477 NR0B1P51843 470 aaKnown RBP17■□□□□ 0.31
CLN3-202ENST00000355477 MAPK12P53778 367 aa17■□□□□ 0.31
CLN3-202ENST00000355477 SLC37A1P57057 533 aa17■□□□□ 0.31
CLN3-202ENST00000355477 Q6ZPB1 254 aaPredicted RBP17■□□□□ 0.31
CLN3-202ENST00000355477 C1orf52Q8N6N3 182 aaKnown RBP17■□□□□ 0.31
CLN3-202ENST00000355477 OR4K14Q8NGD5 310 aa17■□□□□ 0.31
CLN3-202ENST00000355477 METTL6Q8TCB7 284 aa17■□□□□ 0.31
CLN3-202ENST00000355477 TM4SF18Q96CE8 201 aa17■□□□□ 0.31
CLN3-202ENST00000355477 CCDC120Q96HB5 630 aa17■□□□□ 0.31
CLN3-202ENST00000355477 ART5Q96L15 291 aa17■□□□□ 0.31
CLN3-202ENST00000355477 PELOQ9BRX2 385 aaKnown RBP17■□□□□ 0.31
CLN3-202ENST00000355477 C12orf65Q9H3J6 166 aaKnown RBP17■□□□□ 0.31
CLN3-202ENST00000355477 CXorf21Q9HAI6 301 aa17■□□□□ 0.31
CLN3-202ENST00000355477 CES1P1Q9UKY3 287 aa17■□□□□ 0.31
CLN3-202ENST00000355477 CACNA1CQ13936 2221 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 UBFD1O14562 309 aaKnown RBP16.99■□□□□ 0.31
CLN3-202ENST00000355477 TFECO14948 347 aaPredicted RBP16.99■□□□□ 0.31
CLN3-202ENST00000355477 HS6ST1O60243 411 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 GLRA3O75311 464 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 KRT6AP02538 564 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 KRT6BP04259 564 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 CT62P0C5K7 136 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 KRT15P19012 456 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 SSTR4P31391 388 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 KRT6CP48668 564 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 XKP51811 444 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 LCP2Q13094 533 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 CMPK2Q5EBM0 449 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 OPN5Q6U736 354 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 LYPD8Q6UX82 237 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 ZYG11AQ6WRX3 759 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 RNF111Q6ZNA4 994 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 RTL4Q6ZR62 310 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 CNPY4Q8N129 248 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 GHDCQ8N2G8 530 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 CCNYL1Q8N7R7 359 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 OR2M7Q8NG81 312 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 OR52N2Q8NGI0 321 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 CHTF18Q8WVB6 975 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.99■□□□□ 0.315e-8■■■■■ 65.3
CLN3-202ENST00000355477 MAGED4Q96JG8 741 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 KCNA7Q96RP8 456 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 NMRK1Q9NWW6 199 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 VPS29Q9UBQ0 182 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 TIMM22Q9Y584 194 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 PCDHA9Q9Y5H5 950 aa16.99■□□□□ 0.31
CLN3-202ENST00000355477 ULK1O75385 1050 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 MYL2P10916 166 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 CPMP14384 443 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 CNR1P21554 472 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 HMOX2P30519 316 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 CRHR1P34998 444 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 ZNF791Q3KP31 576 aaPredicted RBP16.98■□□□□ 0.31
CLN3-202ENST00000355477 ZNF787Q6DD87 383 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 OR2W6PQ8NHA6 318 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 AGAP11Q8TF27 550 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 ITLN2Q8WWU7 325 aaPredicted RBP16.98■□□□□ 0.31
CLN3-202ENST00000355477 SGCZQ96LD1 299 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 GAL3ST4Q96RP7 486 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 ACPTQ9BZG2 426 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 WWTR1Q9GZV5 400 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 LRBAP50851 2863 aa16.98■□□□□ 0.31
CLN3-202ENST00000355477 C1orf226A1L170 272 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 PLIN3O60664 434 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 PDE9AO76083 593 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 ESRRBO95718 433 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 CCL3P10147 92 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 HSD3B1P14060 373 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 PORP16435 677 aaPredicted RBP16.97■□□□□ 0.31
CLN3-202ENST00000355477 HSD3B2P26439 372 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 CCT5P48643 541 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 FOXA1P55317 472 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 PKNOX1P55347 436 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 VSNL1P62760 191 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 RAE1P78406 368 aaKnown RBP16.97■□□□□ 0.31
CLN3-202ENST00000355477 CSTF3Q12996 717 aaKnown RBP16.97■□□□□ 0.31
CLN3-202ENST00000355477 EBPQ15125 230 aaKnown RBP16.97■□□□□ 0.31
CLN3-202ENST00000355477 FAM180BQ6P0A1 224 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 SLC48A1Q6P1K1 146 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 SCIMPQ6UWF3 145 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms