RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 IL20RAQ9UHF4 553 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 KCNE5Q9UJ90 142 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 GNPTGQ9UJJ9 305 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SNX13Q9Y5W8 968 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 BDP1A6H8Y1 2624 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 C15orf38-AP3S2A0A0A6YYH1 394 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 C2orf81A6NN90 581 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 A8MX80 341 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MAGEB17A8MXT2 336 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 H0Y626 953 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 TMPRSS11DO60235 418 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 BCAS1O75363 584 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 TIPRLO75663 272 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SLC22A3O75751 556 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 NTN1O95631 604 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 HSPA4LO95757 839 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 URODP06132 367 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 UGT2B4P06133 528 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ITGAMP11215 1152 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 LAMP1P11279 417 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 LBPP18428 481 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CRHBPP24387 322 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CSF2RBP32927 897 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 BDKRB1P46663 353 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ARFIP1P53367 373 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MAPK10P53779 464 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MTPNP58546 118 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 RHOAP61586 193 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 REEP5Q00765 189 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MC2RQ01718 297 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 LIPEQ05469 1076 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 TMEM115Q12893 351 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 SHBQ15464 509 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 NADK2Q4G0N4 442 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 AGKQ53H12 422 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CCDC157Q569K6 752 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 HEPHL1Q6MZM0 1159 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 NOXRED1Q6NXP6 359 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ARPINQ7Z6K5 226 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CLECL1Q8IZS7 167 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CLEC4FQ8N1N0 589 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 LIX1Q8N485 282 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PACRGLQ8N7B6 248 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ATG16L2Q8NAA4 619 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MORN4Q8NDC4 146 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CHDHQ8NE62 594 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 OR7G3Q8NG95 312 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ASB12Q8WXK4 309 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ING5Q8WYH8 240 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SNX19Q92543 992 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 TAMM41Q96BW9 452 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PYCR2Q96C36 320 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 TM4SF18Q96CE8 201 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 AURKBQ96GD4 344 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 FBXL20Q96IG2 436 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CNDP2Q96KP4 475 aaKnown RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 TRAPPC9Q96Q05 1148 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 KLHDC3Q9BQ90 382 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ZSCAN5AQ9BUG6 496 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SLC25A23Q9BV35 468 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ADI1Q9BV57 179 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 KLHL4Q9C0H6 718 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 NAA50Q9GZZ1 169 aaKnown RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 DPEP2Q9H4A9 486 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 KLHL31Q9H511 634 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 TMEM38AQ9H6F2 299 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 C6orf106Q9H6K1 298 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 MAGIXQ9H6Y5 334 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ASB8Q9H765 288 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 NT5DC2Q9H857 520 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 RLIMQ9NVW2 624 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ZNF226Q9NYT6 803 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 TAS2R7Q9NYW3 318 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SEMA5BQ9P283 1151 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ZNF624Q9P2J8 865 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 ZNHIT2Q9UHR6 403 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 BTNL2Q9UIR0 455 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SLC22A14Q9Y267 594 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PADI2Q9Y2J8 665 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 POLR3HQ9Y535 204 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 AP4B1Q9Y6B7 739 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MTCH2Q9Y6C9 303 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 F5P12259 2224 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CENPVL1A0A0U1RR11 272 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 NCF1BA6NI72 391 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 A8MVJ9 347 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 NCF1CA8MVU1 366 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 MYO1GB0I1T2 1018 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 RNASET2O00584 256 aaKnown RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 MRASO14807 208 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 AIM2O14862 343 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 VPS4BO75351 444 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 RHOBTB1O94844 696 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SUPT7LO94864 414 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 FGF19O95750 216 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CLIC3O95833 236 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 IGSF6O95976 241 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SLC4A1P02730 911 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PYGLP06737 847 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 C8GP07360 202 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms