RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 ADAMTS16Q8TE57 1224 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 SETD7Q8WTS6 366 aaKnown RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 SLC38A5Q8WUX1 472 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 OTULINQ96BN8 352 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 TEX101Q9BY14 249 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 MYNNQ9NPC7 610 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 DDX28Q9NUL7 540 aaKnown RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 ACSL5Q9ULC5 683 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 ANGPT4Q9Y264 503 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 ASCC3Q8N3C0 2202 aaKnown RBP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 APOL3O95236 402 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 GADD45GO95257 159 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 KRT75O95678 551 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 CELA2BP08218 269 aaPredicted RBP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 NDUFV2P19404 249 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 C21orf33P30042 268 aaPredicted RBP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 CLK1P49759 484 aaKnown RBP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 ISL1P61371 349 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 LSM11P83369 360 aaKnown RBP eCLIP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 PIN1Q13526 163 aaPredicted RBP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 OR4C11Q6IEV9 310 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 MTSS1LQ765P7 747 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 SLC9A6Q92581 669 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 MRGPRX1Q96LB2 322 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 LINC00615Q96LM1 132 aaPredicted RBP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 BTBD1Q9H0C5 482 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 C6orf106Q9H6K1 298 aaPredicted RBP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 TAS2R16Q9NYV7 291 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 KLHL3Q9UH77 587 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 ZNF639Q9UID6 485 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 CD207Q9UJ71 328 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 PLXNA2O75051 1894 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 PNMA8CA0A1B0GUJ8 204 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 A0A1W2PQF6 199 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 DNAJB6O75190 326 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 SEC14L2O76054 403 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 LCKP06239 509 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 HOXB9P17482 250 aaPredicted RBP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 TNNI3P19429 210 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 DDCP20711 480 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 PIK3CBP42338 1070 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 GRSF1Q12849 480 aaKnown RBP eCLIP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 NPRL3Q12980 569 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 SLC9A5Q14940 896 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 USP51Q70EK9 711 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 B3GNT8Q7Z7M8 397 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 ZNF614Q8N883 585 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 AQP11Q8NBQ7 271 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 SIMC1Q8NDZ2 872 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 RELTQ969Z4 430 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 OR2M4Q96R27 311 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 DOK1Q99704 481 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 SLC6A20Q9NP91 592 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 SCN3BQ9NY72 215 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 ALPK3Q96L96 1907 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 OR6C74A6NCV1 312 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 PRAMEF25A6NGN4 478 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 MT-ND2P03891 347 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 DBTP11182 482 aaKnown RBP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 MVDP53602 400 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 MVKQ03426 396 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 BCDIN3DQ7Z5W3 292 aaKnown RBP13.17□□□□□ -0.3
TRIM4-201ENST00000349062 RASGRP3Q8IV61 690 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 RIPOR3Q96MK2 946 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 OR51I1Q9H343 314 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 MAGIXQ9H6Y5 334 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 C1GALT1Q9NS00 363 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 ATP6V1HQ9UI12 483 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 DUSP12Q9UNI6 340 aa13.17□□□□□ -0.3
TRIM4-201ENST00000349062 CDC123O75794 336 aaPredicted RBP13.16□□□□□ -0.3
TRIM4-201ENST00000349062 MFN2O95140 757 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 CTSKP43235 329 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 OXA1LQ15070 435 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 UBE3DQ7Z6J8 389 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 AMIGO1Q86WK6 493 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 OXR1Q8N573 874 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 ACOT4Q8N9L9 421 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 APOL4Q9BPW4 351 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 C1QTNF7Q9BXJ2 289 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 ALOXE3Q9BYJ1 711 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 LHX9Q9NQ69 397 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 PCDHGB3Q9Y5G1 929 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 LOC100506127A0A0U1RQW1 187 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 IFNW1P05000 195 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 HTR1AP08908 422 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 BMP4P12644 408 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 PPIBP23284 216 aaKnown RBP13.16□□□□□ -0.3
TRIM4-201ENST00000349062 GTF2E2P29084 291 aaKnown RBP13.16□□□□□ -0.3
TRIM4-201ENST00000349062 RAB15P59190 212 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 DUSP2Q05923 314 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 RPA4Q13156 261 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 TEAD4Q15561 434 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 DGUOKQ16854 277 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 COLEC12Q5KU26 742 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 OR9A2Q8NGT5 310 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 ELSPBP1Q96BH3 223 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 C1QTNF2Q9BXJ5 285 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 SEMA3GQ9NS98 782 aa13.16□□□□□ -0.3
TRIM4-201ENST00000349062 ZNF106Q9H2Y7 1883 aaKnown RBP13.16□□□□□ -0.3
TRIM4-201ENST00000349062 OR2W5A6NFC9 320 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms