RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MIEF1Q9NQG6 463 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 ZNF282Q9UDV7 671 aaPredicted RBP12.16□□□□□ -0.46
CLK3-201ENST00000345005 APOBEC3BQ9UH17 382 aaKnown RBP12.16□□□□□ -0.46
CLK3-201ENST00000345005 CORO2BQ9UQ03 480 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 SIT1Q9Y3P8 196 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 ENTPD2Q9Y5L3 495 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 A0A1W2PR77 199 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 TLR4O00206 839 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 TNFSF14O43557 240 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 RGS10O43665 173 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 TBX19O60806 448 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 GPR37L1O60883 481 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 INMTO95050 263 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 ENGP17813 658 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 GPX2P18283 190 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 MAPK10P53779 464 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 MLLT10P55197 1068 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 RPS15AP62244 130 aaKnown RBP12.16□□□□□ -0.46
CLK3-201ENST00000345005 IL5RAQ01344 420 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 HEPACAMQ14CZ8 416 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 NPTX1Q15818 432 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 CTU2Q2VPK5 515 aaKnown RBP12.16□□□□□ -0.46
CLK3-201ENST00000345005 ADPRMQ3LIE5 342 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 ZNF385BQ569K4 471 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 SERPINA11Q86U17 422 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 PAQR7Q86WK9 346 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 MFSD4AQ8N468 514 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 OR4A15Q8NGL6 344 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 GOT1L1Q8NHS2 421 aaPredicted RBP12.16□□□□□ -0.46
CLK3-201ENST00000345005 DYNC2LI1Q8TCX1 351 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 DACH2Q96NX9 599 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 OR2A14Q96R47 310 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 IER2Q9BTL4 223 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 TM9SF3Q9HD45 589 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 LHX9Q9NQ69 397 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 RPS6KA6Q9UK32 745 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 SLCO1B1Q9Y6L6 691 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 THADAQ6YHU6 1953 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 MN1Q10571 1320 aaPredicted RBP12.15□□□□□ -0.46
CLK3-201ENST00000345005 OR6C74A6NCV1 312 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 FAM47E-STBD1D6RA91 191 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 RTCAO00442 366 aaKnown RBP12.15□□□□□ -0.46
CLK3-201ENST00000345005 AXIN1O15169 862 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 DPM1O60762 260 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 UGT2B7P16662 529 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 POLR2CP19387 275 aaPredicted RBP12.15□□□□□ -0.46
CLK3-201ENST00000345005 DDCP20711 480 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 FUT4P22083 530 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 IGFBP5P24593 272 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 MAGEA2P43356 314 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 SLC35A2P78381 396 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 VAC14Q08AM6 782 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 ELOCQ15369 112 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 TJAP1Q5JTD0 557 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 ERICH5Q6P6B1 374 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 ENPP6Q6UWR7 440 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 UBE3DQ7Z6J8 389 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 CADM3Q8N126 398 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 NAGSQ8N159 534 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 FAM46DQ8NEK8 389 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 FLVCR1-AS1Q8TAF5 88 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 SLC37A2Q8TED4 501 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 ZDHHC1Q8WTX9 485 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 PATE1Q8WXA2 126 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 NCLNQ969V3 563 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 MS4A6EQ96DS6 147 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 ZNF300Q96RE9 604 aaPredicted RBP12.15□□□□□ -0.46
CLK3-201ENST00000345005 SPATA9Q9BWV2 254 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 KLHL25Q9H0H3 589 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 TPT1P8Q9HAU6 139 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 QPCTLQ9NXS2 382 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 ACTR10Q9NZ32 417 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 ERVK-11Q9UQG0 969 aa12.15□□□□□ -0.46
CLK3-201ENST00000345005 GSAPA4D1B5 854 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 C2orf74A8MZ97 194 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 CENPBD1B2RD01 187 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 NOBOXO60393 691 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 GUCY1B2O75343 617 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 CSF2P04141 144 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 WNT1P04628 370 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 CELA2BP08218 269 aaPredicted RBP12.14□□□□□ -0.47
CLK3-201ENST00000345005 DNAJA1P31689 397 aaKnown RBP12.14□□□□□ -0.47
CLK3-201ENST00000345005 SSR2P43308 183 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 TSFMP43897 325 aaKnown RBP12.14□□□□□ -0.47
CLK3-201ENST00000345005 STXBP1P61764 594 aaKnown RBP12.14□□□□□ -0.47
CLK3-201ENST00000345005 ZNF45Q02386 682 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 TGM3Q08188 693 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 C1orf61Q13536 156 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 PERM1Q5SV97 790 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 FIGLAQ6QHK4 219 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 AVL9Q8NBF6 648 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 OR2L5Q8NG80 312 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 OR10G6Q8NH81 332 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 ZFP90Q8TF47 636 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 CHAC2Q8WUX2 184 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 ZNF764Q96H86 408 aaPredicted RBP12.14□□□□□ -0.47
CLK3-201ENST00000345005 TXNDC15Q96J42 360 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 KCNC2Q96PR1 638 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 LRRC61Q9BV99 259 aa12.14□□□□□ -0.47
CLK3-201ENST00000345005 KLHL20Q9Y2M5 609 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms