RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ZNF675Q8TD23 568 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 KCNJ9Q92806 393 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 PEBP4Q96S96 227 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 TMPRSS11EQ9UL52 423 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 PREX1Q8TCU6 1659 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 CLCA1A8K7I4 914 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 ADAP00813 363 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 SOD2P04179 222 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 GSTT2P0CG29 244 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 HTR2BP41595 481 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 NKX2-5P52952 324 aaPredicted RBP12.09□□□□□ -0.47
SDC3-201ENST00000336798 HSD11B2P80365 405 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 ZBED5Q49AG3 693 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 CSNK1A1LQ8N752 337 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 OR14L1PQ8NHC6 308 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 ZNF461Q8TAF7 563 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 SLC35F5Q8WV83 523 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 NELFAQ9H3P2 528 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 HAO2Q9NYQ3 351 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 PRODH2Q9UF12 536 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 A0A0U1RQK1 487 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 A0A1W2PP18 115 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 RFPL2O75678 378 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 RP2O75695 350 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 IFNA5P01569 189 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 UBE2NP61088 152 aaKnown RBP12.09□□□□□ -0.47
SDC3-201ENST00000336798 PTGR1Q14914 329 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 PCLAFQ15004 111 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 EEF1A1P5Q5VTE0 462 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 DCAF4L2Q8NA75 395 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 WDR92Q96MX6 357 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 CD320Q9NPF0 282 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 DMAC2Q9NW81 257 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 SLC39A1Q9NY26 324 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 ZNF175Q9Y473 711 aa12.09□□□□□ -0.47
SDC3-201ENST00000336798 HEPACAM2A8MVW5 462 aa12.08□□□□□ -0.47
SDC3-201ENST00000336798 EEF1E1-BLOC1S5C9J1V9 151 aa12.08□□□□□ -0.47
SDC3-201ENST00000336798 H3BUI4 141 aa12.08□□□□□ -0.47
SDC3-201ENST00000336798 DUSP3P51452 185 aaPredicted RBP12.08□□□□□ -0.47
SDC3-201ENST00000336798 FAM214AQ32MH5 1076 aa12.08□□□□□ -0.47
SDC3-201ENST00000336798 C18orf21Q32NC0 220 aaPredicted RBP12.08□□□□□ -0.47
SDC3-201ENST00000336798 ZC3H14Q6PJT7 736 aaKnown RBP12.08□□□□□ -0.47
SDC3-201ENST00000336798 KLBQ86Z14 1044 aa12.08□□□□□ -0.47
SDC3-201ENST00000336798 NEIL3Q8TAT5 605 aa12.08□□□□□ -0.47
SDC3-201ENST00000336798 SLC35B2Q8TB61 432 aa12.08□□□□□ -0.47
SDC3-201ENST00000336798 RANBP3Q9H6Z4 567 aaPredicted RBP12.08□□□□□ -0.47
SDC3-201ENST00000336798 TAS2R3Q9NYW6 316 aa12.08□□□□□ -0.47
SDC3-201ENST00000336798 EXOSC1Q9Y3B2 195 aaKnown RBP12.08□□□□□ -0.47
SDC3-201ENST00000336798 PSAT1Q9Y617 370 aa12.08□□□□□ -0.47
SDC3-201ENST00000336798 ZXDBP98169 803 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 SLC36A3Q495N2 470 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 CES4AQ5XG92 561 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 C22orf42Q6IC83 251 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 DPY19L3Q6ZPD9 716 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 SHISA6Q6ZSJ9 500 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 LINC00471Q8N535 108 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 GLYATL2Q8WU03 294 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 KCNN1Q92952 543 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 PAPOLGQ9BWT3 736 aaKnown RBP12.08□□□□□ -0.48
SDC3-201ENST00000336798 NKX2-4Q9H2Z4 354 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 SLC16A5O15375 505 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 JUPP14923 745 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 SLC2A5P22732 501 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 TBPL1P62380 186 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 HACD2Q6Y1H2 254 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 FAM83CQ9BQN1 747 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 DPH7Q9BTV6 452 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 RGCCQ9H4X1 137 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 PLEKHA3Q9HB20 300 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 KCMF1Q9P0J7 381 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 ATRNO75882 1429 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 FAM72CH0Y354 149 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 TAS2R43P59537 309 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 FAM189A2Q15884 450 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 FAM72AQ5TYM5 149 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 FAM72DQ6L9T8 149 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 FAM72BQ86X60 149 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 IGDCC3Q8IVU1 814 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 THRSPQ92748 146 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 KIAA1191Q96A73 305 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 SECISBP2Q96T21 854 aaKnown RBP12.08□□□□□ -0.48
SDC3-201ENST00000336798 UBE2J1Q9Y385 318 aaPredicted RBP12.08□□□□□ -0.48
SDC3-201ENST00000336798 TRBV2A0A0J9YWF9 115 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 P04436 131 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 GLDCP23378 1020 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 ETV5P41161 510 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 RPS15P62841 145 aaKnown RBP12.08□□□□□ -0.48
SDC3-201ENST00000336798 EMX2Q04743 252 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 GRB7Q14451 532 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 SSX2Q16385 188 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 FBXO43Q4G163 708 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 SFT2D3Q587I9 215 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 PRR22Q8IZ63 422 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 ALDH16A1Q8IZ83 802 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 OR52E2Q8NGJ4 325 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 C15orf40Q8WUR7 153 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 ACTR3BQ9P1U1 418 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 MGAT4BQ9UQ53 548 aa12.08□□□□□ -0.48
SDC3-201ENST00000336798 F5H0A9 414 aaPredicted RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 SFTPDP35247 375 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms